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The map label for this gene is yfmR [H]

Identifier: 187933443

GI number: 187933443

Start: 1918246

End: 1920177

Strand: Reverse

Name: yfmR [H]

Synonym: CLL_A1830

Alternate gene names: 187933443

Gene position: 1920177-1918246 (Counterclockwise)

Preceding gene: 187934207

Following gene: 187932716

Centisome position: 50.53

GC content: 26.6

Gene sequence:

>1932_bases
ATGAATATAATTACTTTAGAAAATATATATAAAAGTTACAGTGAAAAAATATTATTAAACAATATATCGTTAGGAATTAA
CGATGGTGATAAAATTGGACTTATAGGCATTAATGGAGCTGGAAAATCAACATTTTTAAAAGTTGTAGGGGGAAGAGATG
AATTTTTTGATGGCTCTATAACAAAAGGAAAAAATGTTAGAATAGAATATCTTTCTCAAAATCCTGATTTTAAAAGTGGC
GCCACAGTTTTAGAACAGATATTTAGAGGTGACACTAAAGAAATGAAACTTCTTATGGAATATGAAGATATATTAGTAAA
AATAAATACTTGCAACGGTGAAGAATTTAATAAATTAAATGACAAACTCATAAAACTTCAAGGTCAAATTGATTCTTTTA
ATTTATGGGACTTAGAAAGTGAAGCTAAAAGTATTTTAAATAAGCTTGGAATATCTAACTATAATGAAATAATGGATAAT
TTATCTGGTGGACAAAAAAAGAGAGTTGCCCTTGCATCAGCTCTTATAACACCTTGTGAATTACTTATATTAGATGAGCC
TACAAATCATCTTGATGCTGAATCTATAGAATGGCTTGAAGAATTTTTAAATACAAGAAAAGGTGCACTTTTAATGATTA
CTCATGATAGATATTTTCTTGATAGAGTTACTAATAGAATAATTGAATTAGATAGAGGAAACCTTTATACATACCCTGGA
AATTATACTGCATTTCTAGAAAAGAAGGTTGAAAGACTTGAAACAGAACAAGTTAAAGAAGAAAAGAGAGATGCATTAAT
TAGAAATGAATTAAAATGGGTAAGAAGAGGTGCTAAAGCTAGAACAACTAAACAAAAAGCAAGATTACAAAGGTTTGATG
AATTAGTAAATACAAAATCTATTGAAATAAAAGATAATGTTGATATATCTTTTGTAGGAAGTAGATTAGGTAAAAAAATA
GTTGAATTATATGATGTAAATAAATCTTTTGATAAAAAACAAATTATAAAAGATTTTAATTATCTATTTTTAAGAGATGA
CAGAATAGGTATAGTTGGAGAAAATGGAGCAGGAAAAACAACTTTAGTTAACTTAATTAGAGGTTTAATACCACTAGATA
GTGGTAGAATTGAAATAGGTGACACTGTAAAGATAGGTTGCTTTGCACAAGACAATGCTCATATTGATCATAATTTAAGA
GTTATAGATTATGTAAAAGAAGGTGGAGAGTATATTCCAACTGAAGATGGAACTAAAATAACAGCCTCTTCTATGTGTGA
AAGATTTTTATTTGATAGCACAATGCAATATACTCCAATTGAAAAATTATCTGGTGGAGAAAAAAGAAGATTACATCTTT
TAAGAGTATTAATGGAATCGCCTAATTTCTTGATATTAGATGAGCCTACAAATGATTTGGACATTGAAACTTTAAAAATT
CTAGAATCATTTTTAGATGAATTTATGGGTATTGTAATTGTTGTATCACATGATAGATACTTTTTAGATAGAATCTGTAA
TAAAATATTCTCTTATGAAGGCGACGGATTAATTAAAGAATATAATGGTAATTATAGTGATTTCTTAATAGCAAAAGAGA
TAGAAAAAAATAATAAATCTTTAGAAAATGAAAAGTCTACTAATAAAGTGAAAAAAGAAAGAGTTAAAAATAAAGAAGAT
AAACCCAAGTTTACTTTTAAGGAACAAAAAGAATTTGAAACTATAGATGGAGATATATCTACTTTAGAAAGTAAGATAGA
ACATCTTGATAAAGATTTAGAGAAAAATGCTACTAATTATGGAAAGCTTAATGAATTGATGAAGGAAAAAGAATTTCTTG
AACAAGAATTAGAACAGAAGTATGAGAGATGGGAATATTTAAATGAAATTGCAGCTTCAATAGAAGAATATAATTCAAAG
AAAAAACAATAA

Upstream 100 bases:

>100_bases
TTATTTATATATAAATTTAGAATTTAGTTAAAATAGAGCATATAAAGAATAAAAACTGAAATACACTAGCTAATAAATAC
ATAAAGGAGTTTTAATTTTA

Downstream 100 bases:

>100_bases
TGGAGGATTTATAGTGGAATTACAAGTTTACTTAAAAGGAAAGAAAGAACCTCTAATATTTAAAGGTGATAGAATCGATG
TTTTAGATATGGAGCTTCAA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MNIITLENIYKSYSEKILLNNISLGINDGDKIGLIGINGAGKSTFLKVVGGRDEFFDGSITKGKNVRIEYLSQNPDFKSG
ATVLEQIFRGDTKEMKLLMEYEDILVKINTCNGEEFNKLNDKLIKLQGQIDSFNLWDLESEAKSILNKLGISNYNEIMDN
LSGGQKKRVALASALITPCELLILDEPTNHLDAESIEWLEEFLNTRKGALLMITHDRYFLDRVTNRIIELDRGNLYTYPG
NYTAFLEKKVERLETEQVKEEKRDALIRNELKWVRRGAKARTTKQKARLQRFDELVNTKSIEIKDNVDISFVGSRLGKKI
VELYDVNKSFDKKQIIKDFNYLFLRDDRIGIVGENGAGKTTLVNLIRGLIPLDSGRIEIGDTVKIGCFAQDNAHIDHNLR
VIDYVKEGGEYIPTEDGTKITASSMCERFLFDSTMQYTPIEKLSGGEKRRLHLLRVLMESPNFLILDEPTNDLDIETLKI
LESFLDEFMGIVIVVSHDRYFLDRICNKIFSYEGDGLIKEYNGNYSDFLIAKEIEKNNKSLENEKSTNKVKKERVKNKED
KPKFTFKEQKEFETIDGDISTLESKIEHLDKDLEKNATNYGKLNELMKEKEFLEQELEQKYERWEYLNEIAASIEEYNSK
KKQ

Sequences:

>Translated_643_residues
MNIITLENIYKSYSEKILLNNISLGINDGDKIGLIGINGAGKSTFLKVVGGRDEFFDGSITKGKNVRIEYLSQNPDFKSG
ATVLEQIFRGDTKEMKLLMEYEDILVKINTCNGEEFNKLNDKLIKLQGQIDSFNLWDLESEAKSILNKLGISNYNEIMDN
LSGGQKKRVALASALITPCELLILDEPTNHLDAESIEWLEEFLNTRKGALLMITHDRYFLDRVTNRIIELDRGNLYTYPG
NYTAFLEKKVERLETEQVKEEKRDALIRNELKWVRRGAKARTTKQKARLQRFDELVNTKSIEIKDNVDISFVGSRLGKKI
VELYDVNKSFDKKQIIKDFNYLFLRDDRIGIVGENGAGKTTLVNLIRGLIPLDSGRIEIGDTVKIGCFAQDNAHIDHNLR
VIDYVKEGGEYIPTEDGTKITASSMCERFLFDSTMQYTPIEKLSGGEKRRLHLLRVLMESPNFLILDEPTNDLDIETLKI
LESFLDEFMGIVIVVSHDRYFLDRICNKIFSYEGDGLIKEYNGNYSDFLIAKEIEKNNKSLENEKSTNKVKKERVKNKED
KPKFTFKEQKEFETIDGDISTLESKIEHLDKDLEKNATNYGKLNELMKEKEFLEQELEQKYERWEYLNEIAASIEEYNSK
KKQ
>Mature_643_residues
MNIITLENIYKSYSEKILLNNISLGINDGDKIGLIGINGAGKSTFLKVVGGRDEFFDGSITKGKNVRIEYLSQNPDFKSG
ATVLEQIFRGDTKEMKLLMEYEDILVKINTCNGEEFNKLNDKLIKLQGQIDSFNLWDLESEAKSILNKLGISNYNEIMDN
LSGGQKKRVALASALITPCELLILDEPTNHLDAESIEWLEEFLNTRKGALLMITHDRYFLDRVTNRIIELDRGNLYTYPG
NYTAFLEKKVERLETEQVKEEKRDALIRNELKWVRRGAKARTTKQKARLQRFDELVNTKSIEIKDNVDISFVGSRLGKKI
VELYDVNKSFDKKQIIKDFNYLFLRDDRIGIVGENGAGKTTLVNLIRGLIPLDSGRIEIGDTVKIGCFAQDNAHIDHNLR
VIDYVKEGGEYIPTEDGTKITASSMCERFLFDSTMQYTPIEKLSGGEKRRLHLLRVLMESPNFLILDEPTNDLDIETLKI
LESFLDEFMGIVIVVSHDRYFLDRICNKIFSYEGDGLIKEYNGNYSDFLIAKEIEKNNKSLENEKSTNKVKKERVKNKED
KPKFTFKEQKEFETIDGDISTLESKIEHLDKDLEKNATNYGKLNELMKEKEFLEQELEQKYERWEYLNEIAASIEEYNSK
KKQ

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=530, Percent_Identity=28.8679245283019, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI27881506, Length=526, Percent_Identity=30.2281368821293, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI10947137, Length=526, Percent_Identity=30.2281368821293, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI69354671, Length=554, Percent_Identity=29.6028880866426, Blast_Score=187, Evalue=3e-47,
Organism=Homo sapiens, GI10947135, Length=554, Percent_Identity=29.6028880866426, Blast_Score=187, Evalue=3e-47,
Organism=Escherichia coli, GI1787182, Length=644, Percent_Identity=35.4037267080745, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI2367384, Length=529, Percent_Identity=38.7523629489603, Blast_Score=364, Evalue=1e-101,
Organism=Escherichia coli, GI1787041, Length=541, Percent_Identity=32.1626617375231, Blast_Score=263, Evalue=3e-71,
Organism=Escherichia coli, GI1789751, Length=614, Percent_Identity=28.9902280130293, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI1788506, Length=557, Percent_Identity=23.6983842010772, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787029, Length=241, Percent_Identity=25.7261410788382, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788165, Length=188, Percent_Identity=28.1914893617021, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786398, Length=249, Percent_Identity=27.710843373494, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788761, Length=207, Percent_Identity=27.0531400966184, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1789963, Length=229, Percent_Identity=27.0742358078603, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1789873, Length=255, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787370, Length=202, Percent_Identity=26.2376237623762, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786703, Length=243, Percent_Identity=27.1604938271605, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1789593, Length=211, Percent_Identity=25.5924170616114, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=562, Percent_Identity=29.5373665480427, Blast_Score=218, Evalue=9e-57,
Organism=Caenorhabditis elegans, GI17553372, Length=537, Percent_Identity=30.1675977653631, Blast_Score=203, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI17555318, Length=555, Percent_Identity=27.7477477477477, Blast_Score=190, Evalue=2e-48,
Organism=Saccharomyces cerevisiae, GI6320874, Length=543, Percent_Identity=31.4917127071823, Blast_Score=201, Evalue=4e-52,
Organism=Saccharomyces cerevisiae, GI6321121, Length=542, Percent_Identity=29.7047970479705, Blast_Score=194, Evalue=3e-50,
Organism=Saccharomyces cerevisiae, GI6324314, Length=405, Percent_Identity=27.6543209876543, Blast_Score=118, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6323278, Length=406, Percent_Identity=28.8177339901478, Blast_Score=116, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6325030, Length=401, Percent_Identity=25.1870324189526, Blast_Score=114, Evalue=5e-26,
Organism=Saccharomyces cerevisiae, GI6324985, Length=336, Percent_Identity=25.8928571428571, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666836, Length=549, Percent_Identity=32.0582877959927, Blast_Score=240, Evalue=3e-63,
Organism=Drosophila melanogaster, GI24642252, Length=549, Percent_Identity=29.5081967213115, Blast_Score=206, Evalue=3e-53,
Organism=Drosophila melanogaster, GI18859989, Length=549, Percent_Identity=29.5081967213115, Blast_Score=206, Evalue=3e-53,
Organism=Drosophila melanogaster, GI24641342, Length=551, Percent_Identity=29.7640653357532, Blast_Score=196, Evalue=6e-50,
Organism=Drosophila melanogaster, GI221500365, Length=216, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007184, Length=216, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 74165; Mature: 74165

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIITLENIYKSYSEKILLNNISLGINDGDKIGLIGINGAGKSTFLKVVGGRDEFFDGSI
CCEEEHHHHHHHHHCEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC
TKGKNVRIEYLSQNPDFKSGATVLEQIFRGDTKEMKLLMEYEDILVKINTCNGEEFNKLN
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHEECEEEEEEECCCCHHHHHHH
DKLIKLQGQIDSFNLWDLESEAKSILNKLGISNYNEIMDNLSGGQKKRVALASALITPCE
HHHEEEECCCCCCEEECCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCCEE
LLILDEPTNHLDAESIEWLEEFLNTRKGALLMITHDRYFLDRVTNRIIELDRGNLYTYPG
EEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEEECCCCEEECCC
NYTAFLEKKVERLETEQVKEEKRDALIRNELKWVRRGAKARTTKQKARLQRFDELVNTKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCE
IEIKDNVDISFVGSRLGKKIVELYDVNKSFDKKQIIKDFNYLFLRDDRIGIVGENGAGKT
EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEEECCEEEEEECCCCCHH
TLVNLIRGLIPLDSGRIEIGDTVKIGCFAQDNAHIDHNLRVIDYVKEGGEYIPTEDGTKI
HHHHHHHHHCCCCCCCEEECCEEEEEEEECCCCCCCCCCEEEEEHHCCCCCCCCCCCCEE
TASSMCERFLFDSTMQYTPIEKLSGGEKRRLHLLRVLMESPNFLILDEPTNDLDIETLKI
EHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
LESFLDEFMGIVIVVSHDRYFLDRICNKIFSYEGDGLIKEYNGNYSDFLIAKEIEKNNKS
HHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCHHEEEHHHHHHCCCC
LENEKSTNKVKKERVKNKEDKPKFTFKEQKEFETIDGDISTLESKIEHLDKDLEKNATNY
CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH
GKLNELMKEKEFLEQELEQKYERWEYLNEIAASIEEYNSKKKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIITLENIYKSYSEKILLNNISLGINDGDKIGLIGINGAGKSTFLKVVGGRDEFFDGSI
CCEEEHHHHHHHHHCEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC
TKGKNVRIEYLSQNPDFKSGATVLEQIFRGDTKEMKLLMEYEDILVKINTCNGEEFNKLN
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHEECEEEEEEECCCCHHHHHHH
DKLIKLQGQIDSFNLWDLESEAKSILNKLGISNYNEIMDNLSGGQKKRVALASALITPCE
HHHEEEECCCCCCEEECCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCCEE
LLILDEPTNHLDAESIEWLEEFLNTRKGALLMITHDRYFLDRVTNRIIELDRGNLYTYPG
EEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEEECCCCEEECCC
NYTAFLEKKVERLETEQVKEEKRDALIRNELKWVRRGAKARTTKQKARLQRFDELVNTKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCE
IEIKDNVDISFVGSRLGKKIVELYDVNKSFDKKQIIKDFNYLFLRDDRIGIVGENGAGKT
EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEEECCEEEEEECCCCCHH
TLVNLIRGLIPLDSGRIEIGDTVKIGCFAQDNAHIDHNLRVIDYVKEGGEYIPTEDGTKI
HHHHHHHHHCCCCCCCEEECCEEEEEEEECCCCCCCCCCEEEEEHHCCCCCCCCCCCCEE
TASSMCERFLFDSTMQYTPIEKLSGGEKRRLHLLRVLMESPNFLILDEPTNDLDIETLKI
EHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
LESFLDEFMGIVIVVSHDRYFLDRICNKIFSYEGDGLIKEYNGNYSDFLIAKEIEKNNKS
HHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCHHEEEHHHHHHCCCC
LENEKSTNKVKKERVKNKEDKPKFTFKEQKEFETIDGDISTLESKIEHLDKDLEKNATNY
CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH
GKLNELMKEKEFLEQELEQKYERWEYLNEIAASIEEYNSKKKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]