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The map label for this gene is pepF1 [H]

Identifier: 187933304

GI number: 187933304

Start: 1938350

End: 1940131

Strand: Reverse

Name: pepF1 [H]

Synonym: CLL_A1846

Alternate gene names: 187933304

Gene position: 1940131-1938350 (Counterclockwise)

Preceding gene: 187935086

Following gene: 187934303

Centisome position: 51.05

GC content: 27.5

Gene sequence:

>1782_bases
ATGGAATTGAATTGGAGTTTAAAAGAAATATATCCATCGTTTGATAGTGAAGAATTTAAAAGTGACTTAGAATCACTTAA
ATATACTATAGAGCTCATTAATGAATGGAGCAATGAGGTAACTATAGATAAAGAAAACTTAGTATTTAAGTTAGAAGAAT
ATATAAAGAAGTTTACTAAATTTACTGATTTAGCAAGTAAATTATCAATATATATAAATTTGGTTTTAAGTGTTGACACT
ACAGATAAAGAAGGTTTAAAATATTCAGATGTTATAGAGAAAAAGTTAACAGAAATTGTTGAAAGCAGTACTAAACTAGA
AAGATGGATTAGTAGTATAGAAAATATAGATGAAGTTATAAGTAAGTCAAGATTACTTAAAGACCATGAGTTTATATTAA
AAAATATAATTGAAAATAGTAAATATTTACTTAGTGATAAAGAGGAAAATATAATTGCTAGTATGAAAAATACAGGATCT
AATGCTTGGCTTAAGCTTAAGGATAAATTAATTTCTAACTTAAAAGTAGATATAGAAGAAAATGGAGAAATTAAATCTTT
ACCACTAACCTTAGTCTTAAATATGGCATATGATAAAGACTCGACTGTTAGAAAAAAAGCATATGAGGCTGAAATAGCTT
CTTATAAAAAGGTTGAAGAAGGGGTAGCTGCAGCTCTTAATGGAATAAAAGGAGAAGTTTTAACTGTCTGTGATTTAAGA
GGGTATAAATCTCCGTTAGAACAAACACTTAAAGATTCAAGAATGGATGAGGAATCTTTAGATGCTATGATTTCTGCAAT
GAAAGAAAGTTTACCTATCTTTAGAAAGTATTTAAGAAGAAAAGCTGAAATTTTAGGATATAAGAATGGATTGCCATTTT
ATGAATTATATGCTCCTATTAACGATGCTGATATGAAATTTAATTATGAAGAAGGAACTAAATTTGTTGTTAAAAATTTT
AATACTTTTAGTAATAACTTAGCTAATTTTGCTAAGAAAGCTATAGATAATTCATGGATAGATGTAATGCCTAAGTCCGG
TAAGGTAGGAGGAGCATTTTGTGAAAATCTACATTTTATAGATGAAAGTAGATTTTTACTTAATTATGGTGAAAGTTTTG
GTGATGTTGTAACACTTGCTCATGAATTAGGTCATGGATTTCATGGTGAATGTTTAAATAATGAAACCACATTAAACTCT
GACTATCCTATGCCAATAGCAGAAACAGCATCAACTTTTTGTGAAACTATAATAAAAAAAGCAGCTATAAAAGAAGCAAC
TAAAGATGAAGCATTATCAATACTAGAAACTGAAATAAGTGATTGTACTCAAGTTATAGTTGATATATATTCAAGATTTC
TATTTGAAAAATCATTTTTTGAAGCAAGAAAAGAAAGTGCTTTAAGTGTAGAAGAAATTAAAGAGTTAATGTTAGCTTCT
CAAATAGAAGCTTATGGTGATGGATTAGACAAAAATTACTTACATCCATATATGTGGACTTGGAAGCCACATTATTATTA
TGCAGATAGTAATTTTTATAATTTCCCATATGCGTTTGGGTTATTATTTGCTAAAGGGCTGTATGCTGAATACTTAAAAA
GAGGGGAGTCATTTTCTAATGAATATGAAAAATTACTTTCAATTACAGGTAAAAATAAAATAGCAGATGTAACAAAAGTT
ATGGGTATAGATATACATGATAAGAAATTTTGGGGAAATTCTTTAAAGACAATAGAAGAAGACATAGAAGAGTTTATGAA
ACTTAGCAGTAAAGTATTGTAA

Upstream 100 bases:

>100_bases
TTATTATAAAAATTCATAACCATTATTTACATGATATAATATATAGTGGTTATGTGTCATTAATTTATATAATCAATATT
AAAGCGTAGAGGAGAAAATA

Downstream 100 bases:

>100_bases
ATTATATGTACAATAAAGTTAACTATTGACAAATTGAGCATATAATTTATAAATATTAATCATAGAAGTATAACATTTAT
AACGCTATTTTACTACAAAG

Product: oligoendopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MELNWSLKEIYPSFDSEEFKSDLESLKYTIELINEWSNEVTIDKENLVFKLEEYIKKFTKFTDLASKLSIYINLVLSVDT
TDKEGLKYSDVIEKKLTEIVESSTKLERWISSIENIDEVISKSRLLKDHEFILKNIIENSKYLLSDKEENIIASMKNTGS
NAWLKLKDKLISNLKVDIEENGEIKSLPLTLVLNMAYDKDSTVRKKAYEAEIASYKKVEEGVAAALNGIKGEVLTVCDLR
GYKSPLEQTLKDSRMDEESLDAMISAMKESLPIFRKYLRRKAEILGYKNGLPFYELYAPINDADMKFNYEEGTKFVVKNF
NTFSNNLANFAKKAIDNSWIDVMPKSGKVGGAFCENLHFIDESRFLLNYGESFGDVVTLAHELGHGFHGECLNNETTLNS
DYPMPIAETASTFCETIIKKAAIKEATKDEALSILETEISDCTQVIVDIYSRFLFEKSFFEARKESALSVEEIKELMLAS
QIEAYGDGLDKNYLHPYMWTWKPHYYYADSNFYNFPYAFGLLFAKGLYAEYLKRGESFSNEYEKLLSITGKNKIADVTKV
MGIDIHDKKFWGNSLKTIEEDIEEFMKLSSKVL

Sequences:

>Translated_593_residues
MELNWSLKEIYPSFDSEEFKSDLESLKYTIELINEWSNEVTIDKENLVFKLEEYIKKFTKFTDLASKLSIYINLVLSVDT
TDKEGLKYSDVIEKKLTEIVESSTKLERWISSIENIDEVISKSRLLKDHEFILKNIIENSKYLLSDKEENIIASMKNTGS
NAWLKLKDKLISNLKVDIEENGEIKSLPLTLVLNMAYDKDSTVRKKAYEAEIASYKKVEEGVAAALNGIKGEVLTVCDLR
GYKSPLEQTLKDSRMDEESLDAMISAMKESLPIFRKYLRRKAEILGYKNGLPFYELYAPINDADMKFNYEEGTKFVVKNF
NTFSNNLANFAKKAIDNSWIDVMPKSGKVGGAFCENLHFIDESRFLLNYGESFGDVVTLAHELGHGFHGECLNNETTLNS
DYPMPIAETASTFCETIIKKAAIKEATKDEALSILETEISDCTQVIVDIYSRFLFEKSFFEARKESALSVEEIKELMLAS
QIEAYGDGLDKNYLHPYMWTWKPHYYYADSNFYNFPYAFGLLFAKGLYAEYLKRGESFSNEYEKLLSITGKNKIADVTKV
MGIDIHDKKFWGNSLKTIEEDIEEFMKLSSKVL
>Mature_593_residues
MELNWSLKEIYPSFDSEEFKSDLESLKYTIELINEWSNEVTIDKENLVFKLEEYIKKFTKFTDLASKLSIYINLVLSVDT
TDKEGLKYSDVIEKKLTEIVESSTKLERWISSIENIDEVISKSRLLKDHEFILKNIIENSKYLLSDKEENIIASMKNTGS
NAWLKLKDKLISNLKVDIEENGEIKSLPLTLVLNMAYDKDSTVRKKAYEAEIASYKKVEEGVAAALNGIKGEVLTVCDLR
GYKSPLEQTLKDSRMDEESLDAMISAMKESLPIFRKYLRRKAEILGYKNGLPFYELYAPINDADMKFNYEEGTKFVVKNF
NTFSNNLANFAKKAIDNSWIDVMPKSGKVGGAFCENLHFIDESRFLLNYGESFGDVVTLAHELGHGFHGECLNNETTLNS
DYPMPIAETASTFCETIIKKAAIKEATKDEALSILETEISDCTQVIVDIYSRFLFEKSFFEARKESALSVEEIKELMLAS
QIEAYGDGLDKNYLHPYMWTWKPHYYYADSNFYNFPYAFGLLFAKGLYAEYLKRGESFSNEYEKLLSITGKNKIADVTKV
MGIDIHDKKFWGNSLKTIEEDIEEFMKLSSKVL

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 68083; Mature: 68083

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNWSLKEIYPSFDSEEFKSDLESLKYTIELINEWSNEVTIDKENLVFKLEEYIKKFTK
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHH
FTDLASKLSIYINLVLSVDTTDKEGLKYSDVIEKKLTEIVESSTKLERWISSIENIDEVI
HHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKSRLLKDHEFILKNIIENSKYLLSDKEENIIASMKNTGSNAWLKLKDKLISNLKVDIEE
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCEEEEHHHHHCCCEEEECC
NGEIKSLPLTLVLNMAYDKDSTVRKKAYEAEIASYKKVEEGVAAALNGIKGEVLTVCDLR
CCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
GYKSPLEQTLKDSRMDEESLDAMISAMKESLPIFRKYLRRKAEILGYKNGLPFYELYAPI
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
NDADMKFNYEEGTKFVVKNFNTFSNNLANFAKKAIDNSWIDVMPKSGKVGGAFCENLHFI
CCCCCEEECCCCCEEEHHCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHCCHHH
DESRFLLNYGESFGDVVTLAHELGHGFHGECLNNETTLNSDYPMPIAETASTFCETIIKK
CCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AAIKEATKDEALSILETEISDCTQVIVDIYSRFLFEKSFFEARKESALSVEEIKELMLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
QIEAYGDGLDKNYLHPYMWTWKPHYYYADSNFYNFPYAFGLLFAKGLYAEYLKRGESFSN
HHHHHCCCCCCCCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
EYEKLLSITGKNKIADVTKVMGIDIHDKKFWGNSLKTIEEDIEEFMKLSSKVL
HHHHHHHHCCCCHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELNWSLKEIYPSFDSEEFKSDLESLKYTIELINEWSNEVTIDKENLVFKLEEYIKKFTK
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHH
FTDLASKLSIYINLVLSVDTTDKEGLKYSDVIEKKLTEIVESSTKLERWISSIENIDEVI
HHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKSRLLKDHEFILKNIIENSKYLLSDKEENIIASMKNTGSNAWLKLKDKLISNLKVDIEE
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCEEEEHHHHHCCCEEEECC
NGEIKSLPLTLVLNMAYDKDSTVRKKAYEAEIASYKKVEEGVAAALNGIKGEVLTVCDLR
CCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
GYKSPLEQTLKDSRMDEESLDAMISAMKESLPIFRKYLRRKAEILGYKNGLPFYELYAPI
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
NDADMKFNYEEGTKFVVKNFNTFSNNLANFAKKAIDNSWIDVMPKSGKVGGAFCENLHFI
CCCCCEEECCCCCEEEHHCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHCCHHH
DESRFLLNYGESFGDVVTLAHELGHGFHGECLNNETTLNSDYPMPIAETASTFCETIIKK
CCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AAIKEATKDEALSILETEISDCTQVIVDIYSRFLFEKSFFEARKESALSVEEIKELMLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
QIEAYGDGLDKNYLHPYMWTWKPHYYYADSNFYNFPYAFGLLFAKGLYAEYLKRGESFSN
HHHHHCCCCCCCCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
EYEKLLSITGKNKIADVTKVMGIDIHDKKFWGNSLKTIEEDIEEFMKLSSKVL
HHHHHHHHCCCCHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7798200; 9209029 [H]