Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
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Accession | NC_010674 |
Length | 3,800,327 |
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The map label for this gene is 187932514
Identifier: 187932514
GI number: 187932514
Start: 2328307
End: 2329032
Strand: Reverse
Name: 187932514
Synonym: CLL_A2238
Alternate gene names: NA
Gene position: 2329032-2328307 (Counterclockwise)
Preceding gene: 187934450
Following gene: 187934366
Centisome position: 61.29
GC content: 24.38
Gene sequence:
>726_bases ATGTCAGTATCTAAAGATTTTATAAAATTTAGACAATATCTAAGAACTTTAAGCCTATCTATAAATGAACAATATTTAAT GGAATTATTATTTGAATATGATAATACCAAATATGGATATTCATTTCTACAATTTACTGACATTATGAAAGCCTTTAATA CGACATCTAAAAATAGAATATCAACAACTATTAAAAAATTAGAAAAAAGAGGTTTGATAGAAGTTGATAGAGCATACAAA AACAATAGATATAAAATTATTGGAATAGATAAATTTATAAATACTTCAGATAAAAAATATAATGATAAACCAAATGATTC TAATGGAAACCCACCATTGAATGGTCAAATACATTTTGCTGAATTAACAGAGGATGAAAATAAACTAGTTAATTTAGGAT TTACAATAAAACAATCTAAAAAACTTTTAAAGGCTGCTAAGGATAAAGTTGAAAATATAATGAAAGCATTTGATTATGCA ACAACTAAAGGGGCTACAAATTTATATGGATATACATTATGGACTATTAGAAATTTAAAGAAAATATCAAGCAATAGTTC AGAAGCATATGCATCAAAAGCAAAAACACTTAAATTTAATAATTTTGAGTCAAGATCATACGATTATAATTTATTGGAGA AGAAATTGTTAGGCTGGGAAAATAATCTTGTAGATGCACAAGAAGAAACATCTTTTGATTTAAAAGGGAGGTTAGCATTA ATTTAA
Upstream 100 bases:
>100_bases GAAACTTTTTTTAAAATAATATTGACTAATATTAGTGAAGGTGATAATATAATAATATGCTTAGTGAAGATTGAATAATA TTAATGAAGAGGTGAAGCAA
Downstream 100 bases:
>100_bases TATAGATTTAAGAGCGTATAAGTTTATATACAATAATGTACAAGTTTAGGAAATACAATTGAATTTGGTGAATTTGAAGG ATTTATATTATATATAGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSVSKDFIKFRQYLRTLSLSINEQYLMELLFEYDNTKYGYSFLQFTDIMKAFNTTSKNRISTTIKKLEKRGLIEVDRAYK NNRYKIIGIDKFINTSDKKYNDKPNDSNGNPPLNGQIHFAELTEDENKLVNLGFTIKQSKKLLKAAKDKVENIMKAFDYA TTKGATNLYGYTLWTIRNLKKISSNSSEAYASKAKTLKFNNFESRSYDYNLLEKKLLGWENNLVDAQEETSFDLKGRLAL I
Sequences:
>Translated_241_residues MSVSKDFIKFRQYLRTLSLSINEQYLMELLFEYDNTKYGYSFLQFTDIMKAFNTTSKNRISTTIKKLEKRGLIEVDRAYK NNRYKIIGIDKFINTSDKKYNDKPNDSNGNPPLNGQIHFAELTEDENKLVNLGFTIKQSKKLLKAAKDKVENIMKAFDYA TTKGATNLYGYTLWTIRNLKKISSNSSEAYASKAKTLKFNNFESRSYDYNLLEKKLLGWENNLVDAQEETSFDLKGRLAL I >Mature_240_residues SVSKDFIKFRQYLRTLSLSINEQYLMELLFEYDNTKYGYSFLQFTDIMKAFNTTSKNRISTTIKKLEKRGLIEVDRAYKN NRYKIIGIDKFINTSDKKYNDKPNDSNGNPPLNGQIHFAELTEDENKLVNLGFTIKQSKKLLKAAKDKVENIMKAFDYAT TKGATNLYGYTLWTIRNLKKISSNSSEAYASKAKTLKFNNFESRSYDYNLLEKKLLGWENNLVDAQEETSFDLKGRLALI
Specific function: Unknown
COG id: COG5527
COG function: function code L; Protein involved in initiation of plasmid replication
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28004; Mature: 27873
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSKDFIKFRQYLRTLSLSINEQYLMELLFEYDNTKYGYSFLQFTDIMKAFNTTSKNRI CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH STTIKKLEKRGLIEVDRAYKNNRYKIIGIDKFINTSDKKYNDKPNDSNGNPPLNGQIHFA HHHHHHHHHCCCEEEHHHHCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE ELTEDENKLVNLGFTIKQSKKLLKAAKDKVENIMKAFDYATTKGATNLYGYTLWTIRNLK ECCCCCCCEEEECEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH KISSNSSEAYASKAKTLKFNNFESRSYDYNLLEKKLLGWENNLVDAQEETSFDLKGRLAL HHCCCCHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEC I C >Mature Secondary Structure SVSKDFIKFRQYLRTLSLSINEQYLMELLFEYDNTKYGYSFLQFTDIMKAFNTTSKNRI CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH STTIKKLEKRGLIEVDRAYKNNRYKIIGIDKFINTSDKKYNDKPNDSNGNPPLNGQIHFA HHHHHHHHHCCCEEEHHHHCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE ELTEDENKLVNLGFTIKQSKKLLKAAKDKVENIMKAFDYATTKGATNLYGYTLWTIRNLK ECCCCCCCEEEECEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH KISSNSSEAYASKAKTLKFNNFESRSYDYNLLEKKLLGWENNLVDAQEETSFDLKGRLAL HHCCCCHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEC I C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA