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The map label for this gene is ytrB [H]

Identifier: 187932458

GI number: 187932458

Start: 3476199

End: 3477059

Strand: Reverse

Name: ytrB [H]

Synonym: CLL_A3306

Alternate gene names: 187932458

Gene position: 3477059-3476199 (Counterclockwise)

Preceding gene: 187932965

Following gene: 187932978

Centisome position: 91.49

GC content: 25.32

Gene sequence:

>861_bases
ATGAATGCACTTGAAATAAAAAGTTTAAATAAAAAGTTTAAAGATTTTAGTTTAGAAGATATAAATTTAAGCTTACCTAA
GGGGTATATATTAGGATATGTAGGGCAAAATGGGGCTGGAAAAACCACAACTATAAAACTCATTATGCAGCATCTAAGGG
CAGATAGTGGAGAAATAAGTGTATTTGGAAAGAAGTACAAAGGAAATGAAATTGAATTTAAAGATATGATTGGATTTGTA
GGTGACGAATGTTATTTTCCAAGCTGCTTCAAGATGAAAGATGTAATTAATACATTGAAAGATTTTTATCCATCATTTAA
TACAGATAAATTTAATCATTATATAGATTTATGGGAATTGCCAAAGGATAAAAAAATTAAAGATTTTTCAAAAGGTATGA
AAATAAAATTAACATTTGCTAGCATATTTGCAAGAAAAACTAAATTGCTTATATTAGATGAACCAACAAGTGGACTTGAT
CCTGTTATTAGAAATGAAATTTTAGAGTTACTACAAGAATATATAGAGGATGGGGAAAAGAGTGTATTATTTTCTACTCA
TATTACAAGTGATTTAGAAAAGATAGCTGATTATATATTTTTTATAAATAAAGGAAAGATGATATTTAATGATACTAAAG
ACAATATATTAGAAAAACATTTAGTAGTAAAAGGTGGTATAGAAGACTTAACATGGGATATAAAAGAAAAATTAATAGGA
TATAAAGAATCAAGTATTGGATTTAAAGGATTGATATATGATAAGGATAGAGAAGATTTAAATGATGAATTATTAATTGA
AAAACCATCTATTGAAGAAATAATTATATTTTATATAAATAAGGGAAGGGAGGCTAAATAA

Upstream 100 bases:

>100_bases
AAGAAGGATTTACTACTGCAATTGAAAATGCAAAATTGGCAAATGTTTCAAATAAAGAACTTATTCTTATTTTAGAAAAT
TTGATGGGGGATGATAAGTA

Downstream 100 bases:

>100_bases
TGAATGCTATAAATTATTTGAAATTTGATTTTAGAATAATAAAAGGAAATATAAAGTATTATTCATTATTTTTAATAGCT
TTTGCTGTATCTATGTTTAA

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNALEIKSLNKKFKDFSLEDINLSLPKGYILGYVGQNGAGKTTTIKLIMQHLRADSGEISVFGKKYKGNEIEFKDMIGFV
GDECYFPSCFKMKDVINTLKDFYPSFNTDKFNHYIDLWELPKDKKIKDFSKGMKIKLTFASIFARKTKLLILDEPTSGLD
PVIRNEILELLQEYIEDGEKSVLFSTHITSDLEKIADYIFFINKGKMIFNDTKDNILEKHLVVKGGIEDLTWDIKEKLIG
YKESSIGFKGLIYDKDREDLNDELLIEKPSIEEIIIFYINKGREAK

Sequences:

>Translated_286_residues
MNALEIKSLNKKFKDFSLEDINLSLPKGYILGYVGQNGAGKTTTIKLIMQHLRADSGEISVFGKKYKGNEIEFKDMIGFV
GDECYFPSCFKMKDVINTLKDFYPSFNTDKFNHYIDLWELPKDKKIKDFSKGMKIKLTFASIFARKTKLLILDEPTSGLD
PVIRNEILELLQEYIEDGEKSVLFSTHITSDLEKIADYIFFINKGKMIFNDTKDNILEKHLVVKGGIEDLTWDIKEKLIG
YKESSIGFKGLIYDKDREDLNDELLIEKPSIEEIIIFYINKGREAK
>Mature_286_residues
MNALEIKSLNKKFKDFSLEDINLSLPKGYILGYVGQNGAGKTTTIKLIMQHLRADSGEISVFGKKYKGNEIEFKDMIGFV
GDECYFPSCFKMKDVINTLKDFYPSFNTDKFNHYIDLWELPKDKKIKDFSKGMKIKLTFASIFARKTKLLILDEPTSGLD
PVIRNEILELLQEYIEDGEKSVLFSTHITSDLEKIADYIFFINKGKMIFNDTKDNILEKHLVVKGGIEDLTWDIKEKLIG
YKESSIGFKGLIYDKDREDLNDELLIEKPSIEEIIIFYINKGREAK

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=210, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI47078218, Length=210, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI116734710, Length=222, Percent_Identity=27.027027027027, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI21536376, Length=220, Percent_Identity=28.1818181818182, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI105990541, Length=222, Percent_Identity=26.1261261261261, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI153792144, Length=205, Percent_Identity=24.8780487804878, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27477115, Length=208, Percent_Identity=24.0384615384615, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI6005701, Length=205, Percent_Identity=23.9024390243902, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI27262624, Length=212, Percent_Identity=25, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI27262626, Length=212, Percent_Identity=25, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI31657092, Length=198, Percent_Identity=24.7474747474747, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI27881501, Length=205, Percent_Identity=25.8536585365854, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI30795238, Length=205, Percent_Identity=25.8536585365854, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1786319, Length=225, Percent_Identity=28.4444444444444, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI48994943, Length=254, Percent_Identity=25.9842519685039, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081782, Length=219, Percent_Identity=27.8538812785388, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=26.3829787234043, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789593, Length=235, Percent_Identity=23.8297872340426, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081709, Length=212, Percent_Identity=24.0566037735849, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081791, Length=210, Percent_Identity=23.3333333333333, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367384, Length=211, Percent_Identity=27.9620853080569, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790162, Length=231, Percent_Identity=26.4069264069264, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994883, Length=220, Percent_Identity=24.5454545454545, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=230, Percent_Identity=25.6521739130435, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=211, Percent_Identity=26.0663507109005, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=211, Percent_Identity=26.0663507109005, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=211, Percent_Identity=26.0663507109005, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=210, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6321081, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24582014, Length=230, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24582012, Length=230, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24650853, Length=217, Percent_Identity=29.0322580645161, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24650855, Length=217, Percent_Identity=29.0322580645161, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281362751, Length=217, Percent_Identity=29.0322580645161, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI85725262, Length=216, Percent_Identity=28.2407407407407, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28574150, Length=221, Percent_Identity=30.316742081448, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI116007328, Length=221, Percent_Identity=30.316742081448, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI221500365, Length=208, Percent_Identity=24.5192307692308, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007184, Length=208, Percent_Identity=24.5192307692308, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24666092, Length=195, Percent_Identity=29.2307692307692, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI221512771, Length=223, Percent_Identity=27.8026905829596, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573571, Length=217, Percent_Identity=24.8847926267281, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573573, Length=216, Percent_Identity=25, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648314, Length=212, Percent_Identity=25.4716981132075, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643674, Length=211, Percent_Identity=24.1706161137441, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 32994; Mature: 32994

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALEIKSLNKKFKDFSLEDINLSLPKGYILGYVGQNGAGKTTTIKLIMQHLRADSGEIS
CCCCHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEE
VFGKKYKGNEIEFKDMIGFVGDECYFPSCFKMKDVINTLKDFYPSFNTDKFNHYIDLWEL
EEEEECCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEEHCCC
PKDKKIKDFSKGMKIKLTFASIFARKTKLLILDEPTSGLDPVIRNEILELLQEYIEDGEK
CCCCCCHHHHCCCEEEEEHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
SVLFSTHITSDLEKIADYIFFINKGKMIFNDTKDNILEKHLVVKGGIEDLTWDIKEKLIG
EEEEEHHHHHHHHHHHHHHEEEECCCEEEECCHHHHHHHHHHEECCHHHHHHHHHHHHCC
YKESSIGFKGLIYDKDREDLNDELLIEKPSIEEIIIFYINKGREAK
CCCCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MNALEIKSLNKKFKDFSLEDINLSLPKGYILGYVGQNGAGKTTTIKLIMQHLRADSGEIS
CCCCHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEE
VFGKKYKGNEIEFKDMIGFVGDECYFPSCFKMKDVINTLKDFYPSFNTDKFNHYIDLWEL
EEEEECCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEEHCCC
PKDKKIKDFSKGMKIKLTFASIFARKTKLLILDEPTSGLDPVIRNEILELLQEYIEDGEK
CCCCCCHHHHCCCEEEEEHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
SVLFSTHITSDLEKIADYIFFINKGKMIFNDTKDNILEKHLVVKGGIEDLTWDIKEKLIG
EEEEEHHHHHHHHHHHHHHEEEECCCEEEECCHHHHHHHHHHEECCHHHHHHHHHHHHCC
YKESSIGFKGLIYDKDREDLNDELLIEKPSIEEIIIFYINKGREAK
CCCCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]