Click here to switch to the map view.

The map label for this gene is 187928940

Identifier: 187928940

GI number: 187928940

Start: 1956580

End: 1957149

Strand: Reverse

Name: 187928940

Synonym: Rpic_1859

Alternate gene names: NA

Gene position: 1957149-1956580 (Counterclockwise)

Preceding gene: 187928943

Following gene: 187928939

Centisome position: 49.64

GC content: 63.86

Gene sequence:

>570_bases
ATGTCCAAATCGCCGACCACCCCGAAAGCTGATCTGCCGCAATCCGCAGCCAATGAGGACGCAGGCAAGGGCGGGCCGAT
CGTGTCTTCGTCACACCTGGTGTCGGCGCGCAGCCCCGAGTTGTCGGAGTTCGAGTTCGCGCTCAACACCGCCTACAACG
CCTACAACCGCTGGTGCGTGCGCTGCATGGCCGCCGCCGGCGTGCGCGACCTGACCTTCCTCGATGTGCTGGTGGTGCAT
CACGTCAACCACCGCGGCCGCGCCAAGCGCCTGGCCGACATCTGTTTCGTGCTGAACGTGGAAGACACCCACCTTGTCAC
GTATTCCCTCAAGAAACTGCAGGGGATGGACCTGGTGGAGGGCACGCGCAACGGCAAGGAAGTCACCTACACCACCACCG
AAGCCGGCGAAAAGGCCTGCGCCCGCTACCGCGAGATCCGCGAGCAGTGCCTGACCAGCAATATTTCGCCCAGCGGCGAG
GAAAATGCCGAAATTGGCGAACTGGCGCGCCTGCTGCGCGTGCTGACGGGTCTTTACGAGCAGGCGGCACGGTCCGCTAC
GTCGCTGTAA

Upstream 100 bases:

>100_bases
AGGGTGTGAGGACATGGCAACTACGCTTTCAACAGTGCAGACATGACGATCTATTCTCTTACAATAGCCCGCGTTTACGG
TCCTTTCCCAGCCTGTTGCA

Downstream 100 bases:

>100_bases
AACGGGCGTTTTTGACCCGTTCCGGCCGAGGCAGGCGCATTTCGGGCCGATTTGAGGGTCGGTAACAAGGACGGGGCAAG
GTACAATGGCGGTTTCCCCG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MarR Family; Transcription Regulator; MarR Family Regulatory Helix-Turn-Helix Protein; Transcription Regulator MarR-Type HTH Domain

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSKSPTTPKADLPQSAANEDAGKGGPIVSSSHLVSARSPELSEFEFALNTAYNAYNRWCVRCMAAAGVRDLTFLDVLVVH
HVNHRGRAKRLADICFVLNVEDTHLVTYSLKKLQGMDLVEGTRNGKEVTYTTTEAGEKACARYREIREQCLTSNISPSGE
ENAEIGELARLLRVLTGLYEQAARSATSL

Sequences:

>Translated_189_residues
MSKSPTTPKADLPQSAANEDAGKGGPIVSSSHLVSARSPELSEFEFALNTAYNAYNRWCVRCMAAAGVRDLTFLDVLVVH
HVNHRGRAKRLADICFVLNVEDTHLVTYSLKKLQGMDLVEGTRNGKEVTYTTTEAGEKACARYREIREQCLTSNISPSGE
ENAEIGELARLLRVLTGLYEQAARSATSL
>Mature_188_residues
SKSPTTPKADLPQSAANEDAGKGGPIVSSSHLVSARSPELSEFEFALNTAYNAYNRWCVRCMAAAGVRDLTFLDVLVVHH
VNHRGRAKRLADICFVLNVEDTHLVTYSLKKLQGMDLVEGTRNGKEVTYTTTEAGEKACARYREIREQCLTSNISPSGEE
NAEIGELARLLRVLTGLYEQAARSATSL

Specific function: Unknown

COG id: COG5631

COG function: function code K; Predicted transcription regulator, contains HTH domain (MarR family)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20689; Mature: 20557

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSPTTPKADLPQSAANEDAGKGGPIVSSSHLVSARSPELSEFEFALNTAYNAYNRWCV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RCMAAAGVRDLTFLDVLVVHHVNHRGRAKRLADICFVLNVEDTHLVTYSLKKLQGMDLVE
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCHHHH
GTRNGKEVTYTTTEAGEKACARYREIREQCLTSNISPSGEENAEIGELARLLRVLTGLYE
CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QAARSATSL
HHHHHHCCC
>Mature Secondary Structure 
SKSPTTPKADLPQSAANEDAGKGGPIVSSSHLVSARSPELSEFEFALNTAYNAYNRWCV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RCMAAAGVRDLTFLDVLVVHHVNHRGRAKRLADICFVLNVEDTHLVTYSLKKLQGMDLVE
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCHHHH
GTRNGKEVTYTTTEAGEKACARYREIREQCLTSNISPSGEENAEIGELARLLRVLTGLYE
CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QAARSATSL
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA