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The map label for this gene is ybhD [H]

Identifier: 187927645

GI number: 187927645

Start: 584216

End: 585133

Strand: Reverse

Name: ybhD [H]

Synonym: Rpic_0545

Alternate gene names: 187927645

Gene position: 585133-584216 (Counterclockwise)

Preceding gene: 187927646

Following gene: 187927641

Centisome position: 14.84

GC content: 64.05

Gene sequence:

>918_bases
GTGGGCATCAATTTCGATTTGACGGACTTGCAGGCATTTCGCGCGGTGGTGGAGTTGGGCAACTTCCGGAAGGCCGCCGA
GGCGATCAGCATTTCCCAGCCCGCGTTGAGCCGCCGGATCGACAAGCTCGAAAGCGCGCTCGGCGTTCCCCTGTTTGAGC
GCACCACCCGCAGCGTCACACTCACCACCGTCGGCCGCGTGTTTGCCCGCAGCGCTGAACAACTGCTCGACGATCTCGAC
GTCGCCCTGCTCGGTATCCGCGACGTTTCATCGAGCCGCCTCGGGCAGGTGACCATCGCATGCGTGCCGTCGGTGGCCTA
TTACTTTCTGCCGAACCTGATTGCGACCTATCACCGCCGCTTTCCGCGCATCCGGGTCAAGCTGCTGGATGCAAGCGCGA
ACGAAGTGCTGGGTGCAGTCATCAGCGGCGAGGCAGATTTTGGCGTGAGCTTCATGGGCAGCCAAGAGCCCGAGATCGAG
TTCAAGATGCTGCTTCAGGAGCGGTTTGTTGCAGCCTGCCGGCGCGATCATCCGCTCGCCCGCAAGAAGCGCGTGACGTG
GAACGAGCTTTACGAACACGAATACGTCTCAGTGGACAAGACCTCCGGCAACCGCCTGCTGCTGGACCAGGCGCTGTCGG
CCGTGGCGCCGCGTGCGCCGAGCGTCTGCGAAACGCGGCACGTCACGACCATGCTGGGGTTGGTTGAAGCGGGGCTGGGT
GTCGCTGCGGTGCCATCGATGGCCATGCCGGGGCATGAGCACCCGATTCTCACGAGCGTGCCGCTGGTGGAGCCGGTGGT
GAACCGGCGCGTGGGCATCGTGAAGCGGCGCGGCCGGGCGCTCACACCGGCCGCGGAGGAATTTCACCGGATGATCATTG
AAGCGAAGCGCAGCGGCATGATGGCAAGCGATGCATAG

Upstream 100 bases:

>100_bases
AGCATCCAACCGGGCGGGCCACGCCGCGGGCCGCTGGAGACGTGTCACCCCGTGATAAATCGCGCAAAATGCTGCGCATC
TGGGATGTGGAGGCTGGCCG

Downstream 100 bases:

>100_bases
CCAGCAGCGCTTGCCCTGCCACGCGGGCGCCGTGCCTCAACGCGCAAGTACCGAATCGAGGCCAGTCGATTTCACGTCTG
CCTGAGCGCCGGGCGAAGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MGINFDLTDLQAFRAVVELGNFRKAAEAISISQPALSRRIDKLESALGVPLFERTTRSVTLTTVGRVFARSAEQLLDDLD
VALLGIRDVSSSRLGQVTIACVPSVAYYFLPNLIATYHRRFPRIRVKLLDASANEVLGAVISGEADFGVSFMGSQEPEIE
FKMLLQERFVAACRRDHPLARKKRVTWNELYEHEYVSVDKTSGNRLLLDQALSAVAPRAPSVCETRHVTTMLGLVEAGLG
VAAVPSMAMPGHEHPILTSVPLVEPVVNRRVGIVKRRGRALTPAAEEFHRMIIEAKRSGMMASDA

Sequences:

>Translated_305_residues
MGINFDLTDLQAFRAVVELGNFRKAAEAISISQPALSRRIDKLESALGVPLFERTTRSVTLTTVGRVFARSAEQLLDDLD
VALLGIRDVSSSRLGQVTIACVPSVAYYFLPNLIATYHRRFPRIRVKLLDASANEVLGAVISGEADFGVSFMGSQEPEIE
FKMLLQERFVAACRRDHPLARKKRVTWNELYEHEYVSVDKTSGNRLLLDQALSAVAPRAPSVCETRHVTTMLGLVEAGLG
VAAVPSMAMPGHEHPILTSVPLVEPVVNRRVGIVKRRGRALTPAAEEFHRMIIEAKRSGMMASDA
>Mature_304_residues
GINFDLTDLQAFRAVVELGNFRKAAEAISISQPALSRRIDKLESALGVPLFERTTRSVTLTTVGRVFARSAEQLLDDLDV
ALLGIRDVSSSRLGQVTIACVPSVAYYFLPNLIATYHRRFPRIRVKLLDASANEVLGAVISGEADFGVSFMGSQEPEIEF
KMLLQERFVAACRRDHPLARKKRVTWNELYEHEYVSVDKTSGNRLLLDQALSAVAPRAPSVCETRHVTTMLGLVEAGLGV
AAVPSMAMPGHEHPILTSVPLVEPVVNRRVGIVKRRGRALTPAAEEFHRMIIEAKRSGMMASDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=42.560553633218, Blast_Score=261, Evalue=5e-71,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=33.448275862069, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI157672245, Length=282, Percent_Identity=30.1418439716312, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790399, Length=297, Percent_Identity=28.2828282828283, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=32.0987654320988, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=26.4604810996564, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787879, Length=298, Percent_Identity=28.1879194630872, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789204, Length=239, Percent_Identity=25.9414225941423, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=28.8461538461538, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI87081904, Length=300, Percent_Identity=26.3333333333333, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=27.9166666666667, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787806, Length=284, Percent_Identity=26.4084507042254, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790208, Length=161, Percent_Identity=32.9192546583851, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786508, Length=243, Percent_Identity=26.7489711934156, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=24.0418118466899, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI2367136, Length=251, Percent_Identity=25.0996015936255, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788706, Length=290, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786401, Length=123, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=285, Percent_Identity=22.4561403508772, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788296, Length=230, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789506, Length=186, Percent_Identity=24.1935483870968, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790783, Length=311, Percent_Identity=24.7588424437299, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787128, Length=144, Percent_Identity=29.8611111111111, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=29.2682926829268, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787589, Length=154, Percent_Identity=30.5194805194805, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786713, Length=182, Percent_Identity=31.3186813186813, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33547; Mature: 33416

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGINFDLTDLQAFRAVVELGNFRKAAEAISISQPALSRRIDKLESALGVPLFERTTRSVT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCEEH
LTTVGRVFARSAEQLLDDLDVALLGIRDVSSSRLGQVTIACVPSVAYYFLPNLIATYHRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
FPRIRVKLLDASANEVLGAVISGEADFGVSFMGSQEPEIEFKMLLQERFVAACRRDHPLA
CCEEEEEEECCCHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
RKKRVTWNELYEHEYVSVDKTSGNRLLLDQALSAVAPRAPSVCETRHVTTMLGLVEAGLG
HHHCCCHHHHHHHHCEEEECCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
VAAVPSMAMPGHEHPILTSVPLVEPVVNRRVGIVKRRGRALTPAAEEFHRMIIEAKRSGM
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
MASDA
CCCCC
>Mature Secondary Structure 
GINFDLTDLQAFRAVVELGNFRKAAEAISISQPALSRRIDKLESALGVPLFERTTRSVT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCEEH
LTTVGRVFARSAEQLLDDLDVALLGIRDVSSSRLGQVTIACVPSVAYYFLPNLIATYHRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
FPRIRVKLLDASANEVLGAVISGEADFGVSFMGSQEPEIEFKMLLQERFVAACRRDHPLA
CCEEEEEEECCCHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
RKKRVTWNELYEHEYVSVDKTSGNRLLLDQALSAVAPRAPSVCETRHVTTMLGLVEAGLG
HHHCCCHHHHHHHHCEEEECCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
VAAVPSMAMPGHEHPILTSVPLVEPVVNRRVGIVKRRGRALTPAAEEFHRMIIEAKRSGM
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
MASDA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]