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The map label for this gene is ydhC [H]

Identifier: 187927613

GI number: 187927613

Start: 551062

End: 551778

Strand: Reverse

Name: ydhC [H]

Synonym: Rpic_0513

Alternate gene names: 187927613

Gene position: 551778-551062 (Counterclockwise)

Preceding gene: 187927617

Following gene: 187927612

Centisome position: 14.0

GC content: 67.36

Gene sequence:

>717_bases
ATGTCGCGTCCCATCAAGCTGGTTTCAGGCGCCGCCAAACCCGCGCCCGCACCGTTTGCCGTTGAGCCGGCAGCCCATGC
GCCCAAGGGCGCCGCCATGCGTGAACTCGCCTACAACGAGATCAAGCGCCGCATCATGGCGTGCGAATTCCGCCCCGGCG
AGCCGCTCAACGAAGCACAGCTCGGCGCGCTTCTCGGGCTGGGCCGCACGCCCATCCACCAGGCGCTGCATCGTCTGGAG
GTGGAAGGGCTGGTGCAGATCCTGCCGCGCAAGGGCGTGCTGGTGACGCCGCTGTCGCTCAACGACGTGCTCGACATGAT
CGAGGTGCGCGCCACCAACGAGATCCTGTGCGTAACGCTGGCCGCCGAGCGTGCCCACCCGGCCGATTTCGAGGCCATGC
GCGCCATCGTCGAAGCATCGCCCGCGCTGATCGAGCACCGGGACATTGCCGCGCTGGCCGCGCTGGACCTCAAGTTCCAT
CTCGCCATTTCCGCTGCCTCGCGCAACCGCGTGCTGGCCGAACTGCTGCGCGGCCTGCACGAGAAGCAGGCGCGCTTCTG
GTTCCTCTCGCTTTCAGAGCCGCAACACCTGCAGAACGTGTACGACGAGCACCTTGCCGTGCTCGATGCGCTGGAGCGCC
GCGATGTGCCCGCAGCGCGCGAAGCCATTCGCGAGCACATCGACGAGTTCCGCCGCACGATCATCCGCACGCTCTGA

Upstream 100 bases:

>100_bases
ACTTAGATGAAGACAGCTGAATGCGGCGTGTTGGCCGCTTGACGCTCTGTGAGATATCACAATACCATCACTCGACTTTT
ACTAGATTCAAGGCCGCCCC

Downstream 100 bases:

>100_bases
CCCCGATTCCCCCCGTTTGTTGTTCCCGCCTCTTCCGGATTCCGCATGACCACGCTGCACCTGAACCTGATCGGCCACGG
CCCCATCGACGTGACCGTGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSRPIKLVSGAAKPAPAPFAVEPAAHAPKGAAMRELAYNEIKRRIMACEFRPGEPLNEAQLGALLGLGRTPIHQALHRLE
VEGLVQILPRKGVLVTPLSLNDVLDMIEVRATNEILCVTLAAERAHPADFEAMRAIVEASPALIEHRDIAALAALDLKFH
LAISAASRNRVLAELLRGLHEKQARFWFLSLSEPQHLQNVYDEHLAVLDALERRDVPAAREAIREHIDEFRRTIIRTL

Sequences:

>Translated_238_residues
MSRPIKLVSGAAKPAPAPFAVEPAAHAPKGAAMRELAYNEIKRRIMACEFRPGEPLNEAQLGALLGLGRTPIHQALHRLE
VEGLVQILPRKGVLVTPLSLNDVLDMIEVRATNEILCVTLAAERAHPADFEAMRAIVEASPALIEHRDIAALAALDLKFH
LAISAASRNRVLAELLRGLHEKQARFWFLSLSEPQHLQNVYDEHLAVLDALERRDVPAAREAIREHIDEFRRTIIRTL
>Mature_237_residues
SRPIKLVSGAAKPAPAPFAVEPAAHAPKGAAMRELAYNEIKRRIMACEFRPGEPLNEAQLGALLGLGRTPIHQALHRLEV
EGLVQILPRKGVLVTPLSLNDVLDMIEVRATNEILCVTLAAERAHPADFEAMRAIVEASPALIEHRDIAALAALDLKFHL
AISAASRNRVLAELLRGLHEKQARFWFLSLSEPQHLQNVYDEHLAVLDALERRDVPAAREAIREHIDEFRRTIIRTL

Specific function: Unknown

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=204, Percent_Identity=28.4313725490196, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787821, Length=197, Percent_Identity=22.8426395939086, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790032, Length=209, Percent_Identity=31.1004784688995, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790780, Length=226, Percent_Identity=27.4336283185841, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26408; Mature: 26277

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPIKLVSGAAKPAPAPFAVEPAAHAPKGAAMRELAYNEIKRRIMACEFRPGEPLNEAQ
CCCCHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LGALLGLGRTPIHQALHRLEVEGLVQILPRKGVLVTPLSLNDVLDMIEVRATNEILCVTL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEE
AAERAHPADFEAMRAIVEASPALIEHRDIAALAALDLKFHLAISAASRNRVLAELLRGLH
ECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHH
EKQARFWFLSLSEPQHLQNVYDEHLAVLDALERRDVPAAREAIREHIDEFRRTIIRTL
HHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRPIKLVSGAAKPAPAPFAVEPAAHAPKGAAMRELAYNEIKRRIMACEFRPGEPLNEAQ
CCCHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LGALLGLGRTPIHQALHRLEVEGLVQILPRKGVLVTPLSLNDVLDMIEVRATNEILCVTL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEE
AAERAHPADFEAMRAIVEASPALIEHRDIAALAALDLKFHLAISAASRNRVLAELLRGLH
ECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHH
EKQARFWFLSLSEPQHLQNVYDEHLAVLDALERRDVPAAREAIREHIDEFRRTIIRTL
HHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]