Click here to switch to the map view.

The map label for this gene is 187927562

Identifier: 187927562

GI number: 187927562

Start: 493734

End: 495053

Strand: Reverse

Name: 187927562

Synonym: Rpic_0462

Alternate gene names: NA

Gene position: 495053-493734 (Counterclockwise)

Preceding gene: 187927563

Following gene: 187927561

Centisome position: 12.56

GC content: 56.06

Gene sequence:

>1320_bases
ATGCACAAGATCCCCCGCCTTCTCCGGTCCCGTCACGGGGTCTACTACCTGCGCCTCACGCACGGCAAAACCGACACTCG
CCGCTCTCTCGGCACAAAAGATTTCCAGCGGGCTAAACTGTCCGCTTTGTTACTGAACGTGCACGTTGAGATGAGCAAGT
CGCGCCTTGATGCTGAGATGTTCCGTCACCTCGATATCGCGCTGCCGAACGGGGTCAAGCTCACGAATATCCAGCCCGAG
GACAAGGGCATTCTGTTCGACATTCTCGACAAGCTCGGCGTGACAGGCGAACAGCTCGCCGCGATGCCAACAACGGAAGT
TGCCAGGCTACTGGCCGGTCCCGAGCCTCAGCGCATGGAGCCGCCGAAACCGAAGAGCAAGCCGCTCTCCGACGTCATTG
CGCTCTACCTCACAGAAAAGAAGCTCGATAACGTAGCGAAAACACTGGAGGACAAGGAACGCACCTTTACCGAGTTCCAG
GGGTTCTTCCAGGACAGCGATATCAACGCCTTTGATGCCGATACCGCAATCGCCTACAAGAACCGGCTGCTCGCCGCCAA
TGCGTCGGCCAGCCGAATCAATGCGAAGACCTCGTTCCTGAGGGATCTCTTCGCATACGCAATCAACAATAACCTGTACT
TCACCACCAACCCGTTCGAGAAGGTCCGCGTCTCGAGCAAAACCAAGCTAAAACAACAAGTGGAATCCTATCGAGAATTC
ACGGACGACGATCTCAAGCTGATCTTCGCCGAGGCACCGTATCGGGAGTTCATGAACAAGCCCGACTATCACTGGTTGCC
GCTGCTTGCCCTCTACACGGGTGCTCGGGTCGAGGAGCTGGCAAGCCTGTCGCTGAACCAGATCAAGAAGGATGGCGGTA
TTCACTACTTCGAGATCGAGAAAGCCAAGAACCTCAATTCGATCCGCAAAATCCCGCTACACCGGCAGATCGAAACCTCG
GGATTCCTGGCCTACGTGGACAGCGTGCGCGCTCAAGGTGCGACGATGCTGTTTCCCCACCTGACAGCGGGCAAGAACGG
CTACAGCAAGAATATGTCGCGCCGATTCGGGGCTTACCTCGACTCGCTGAAGATCAGCGATTCCCGCAAGGTGTTTCACT
CGTTCCGCCACACGTTCATTACTCGTATGACGGAATTGAACGTCCACCCGGTGCTGGTCATGTCCATGGTGGGGCACTAT
GCGCAGGCGAAGGTGGATCTTTCTGCGCCGCACGTCGTCAATTATCAGCACGAGAAGCCGTTATCCGTTTTGAAGCAGAC
CATTGACCGGCTGGAATTCCCGATCAAGCATTTCTGGTAA

Upstream 100 bases:

>100_bases
CCCTGATTCGCCACCAAATGCTGTAAGCCCTTGATACTTCTCACGAAGTTCAAGGGCTTTTTTCTTGTGGTGTCACGGCC
GGTGTCACAGATACCCGACC

Downstream 100 bases:

>100_bases
CGCTTCACCGCCCTGCCCCTCGGCAGCAGTTCCACTGACTGGAGATAACGCAGTCGGCAGAATATTACCGTTCTGCCCTG
CCCGCTTTCGTGCCATGGAT

Product: integrase family protein

Products: NA

Alternate protein names: Integrase; Phage-Related Integrase; Phage Integrase; Phage Integrase Family Protein; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase; Phage Integerase; Site-Specific Recombinase Phage Integrase Family; Integrase/Resolvase Recombinase Protein; Phage Integrase Domain/SAM Domain-Containing Protein; Integrase Domain-Containing Protein; Integrase Domain Protein SAM Domain Protein; DNA-Binfing Protein

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MHKIPRLLRSRHGVYYLRLTHGKTDTRRSLGTKDFQRAKLSALLLNVHVEMSKSRLDAEMFRHLDIALPNGVKLTNIQPE
DKGILFDILDKLGVTGEQLAAMPTTEVARLLAGPEPQRMEPPKPKSKPLSDVIALYLTEKKLDNVAKTLEDKERTFTEFQ
GFFQDSDINAFDADTAIAYKNRLLAANASASRINAKTSFLRDLFAYAINNNLYFTTNPFEKVRVSSKTKLKQQVESYREF
TDDDLKLIFAEAPYREFMNKPDYHWLPLLALYTGARVEELASLSLNQIKKDGGIHYFEIEKAKNLNSIRKIPLHRQIETS
GFLAYVDSVRAQGATMLFPHLTAGKNGYSKNMSRRFGAYLDSLKISDSRKVFHSFRHTFITRMTELNVHPVLVMSMVGHY
AQAKVDLSAPHVVNYQHEKPLSVLKQTIDRLEFPIKHFW

Sequences:

>Translated_439_residues
MHKIPRLLRSRHGVYYLRLTHGKTDTRRSLGTKDFQRAKLSALLLNVHVEMSKSRLDAEMFRHLDIALPNGVKLTNIQPE
DKGILFDILDKLGVTGEQLAAMPTTEVARLLAGPEPQRMEPPKPKSKPLSDVIALYLTEKKLDNVAKTLEDKERTFTEFQ
GFFQDSDINAFDADTAIAYKNRLLAANASASRINAKTSFLRDLFAYAINNNLYFTTNPFEKVRVSSKTKLKQQVESYREF
TDDDLKLIFAEAPYREFMNKPDYHWLPLLALYTGARVEELASLSLNQIKKDGGIHYFEIEKAKNLNSIRKIPLHRQIETS
GFLAYVDSVRAQGATMLFPHLTAGKNGYSKNMSRRFGAYLDSLKISDSRKVFHSFRHTFITRMTELNVHPVLVMSMVGHY
AQAKVDLSAPHVVNYQHEKPLSVLKQTIDRLEFPIKHFW
>Mature_439_residues
MHKIPRLLRSRHGVYYLRLTHGKTDTRRSLGTKDFQRAKLSALLLNVHVEMSKSRLDAEMFRHLDIALPNGVKLTNIQPE
DKGILFDILDKLGVTGEQLAAMPTTEVARLLAGPEPQRMEPPKPKSKPLSDVIALYLTEKKLDNVAKTLEDKERTFTEFQ
GFFQDSDINAFDADTAIAYKNRLLAANASASRINAKTSFLRDLFAYAINNNLYFTTNPFEKVRVSSKTKLKQQVESYREF
TDDDLKLIFAEAPYREFMNKPDYHWLPLLALYTGARVEELASLSLNQIKKDGGIHYFEIEKAKNLNSIRKIPLHRQIETS
GFLAYVDSVRAQGATMLFPHLTAGKNGYSKNMSRRFGAYLDSLKISDSRKVFHSFRHTFITRMTELNVHPVLVMSMVGHY
AQAKVDLSAPHVVNYQHEKPLSVLKQTIDRLEFPIKHFW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50276; Mature: 50276

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKIPRLLRSRHGVYYLRLTHGKTDTRRSLGTKDFQRAKLSALLLNVHVEMSKSRLDAEM
CCHHHHHHHHCCCEEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRHLDIALPNGVKLTNIQPEDKGILFDILDKLGVTGEQLAAMPTTEVARLLAGPEPQRME
HHHHHEECCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCCCC
PPKPKSKPLSDVIALYLTEKKLDNVAKTLEDKERTFTEFQGFFQDSDINAFDADTAIAYK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
NRLLAANASASRINAKTSFLRDLFAYAINNNLYFTTNPFEKVRVSSKTKLKQQVESYREF
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHC
TDDDLKLIFAEAPYREFMNKPDYHWLPLLALYTGARVEELASLSLNQIKKDGGIHYFEIE
CCCCEEEEEECCCHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEC
KAKNLNSIRKIPLHRQIETSGFLAYVDSVRAQGATMLFPHLTAGKNGYSKNMSRRFGAYL
CCCCCHHHHCCCCCCEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
DSLKISDSRKVFHSFRHTFITRMTELNVHPVLVMSMVGHYAQAKVDLSAPHVVNYQHEKP
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEECCCCCEECCCCCCH
LSVLKQTIDRLEFPIKHFW
HHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure
MHKIPRLLRSRHGVYYLRLTHGKTDTRRSLGTKDFQRAKLSALLLNVHVEMSKSRLDAEM
CCHHHHHHHHCCCEEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRHLDIALPNGVKLTNIQPEDKGILFDILDKLGVTGEQLAAMPTTEVARLLAGPEPQRME
HHHHHEECCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCCCC
PPKPKSKPLSDVIALYLTEKKLDNVAKTLEDKERTFTEFQGFFQDSDINAFDADTAIAYK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
NRLLAANASASRINAKTSFLRDLFAYAINNNLYFTTNPFEKVRVSSKTKLKQQVESYREF
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHC
TDDDLKLIFAEAPYREFMNKPDYHWLPLLALYTGARVEELASLSLNQIKKDGGIHYFEIE
CCCCEEEEEECCCHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEC
KAKNLNSIRKIPLHRQIETSGFLAYVDSVRAQGATMLFPHLTAGKNGYSKNMSRRFGAYL
CCCCCHHHHCCCCCCEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
DSLKISDSRKVFHSFRHTFITRMTELNVHPVLVMSMVGHYAQAKVDLSAPHVVNYQHEKP
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEECCCCCEECCCCCCH
LSVLKQTIDRLEFPIKHFW
HHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA