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The map label for this gene is vanR [H]

Identifier: 187927560

GI number: 187927560

Start: 492274

End: 493035

Strand: Reverse

Name: vanR [H]

Synonym: Rpic_0460

Alternate gene names: 187927560

Gene position: 493035-492274 (Counterclockwise)

Preceding gene: 187927561

Following gene: 187927558

Centisome position: 12.51

GC content: 59.19

Gene sequence:

>762_bases
ATGGTATCGCCGCTCTACACGTTCGAGGGCTTGCTAACTGCAGGCTCACATGCGGAGATCGCAGCCTTCATGGAACGCCA
TGCGGGCAACCTCGGCTATGGCCGATTCTTCTACTCGCCGCTGCTCGTCGCCGGTGATGCCCGGCACTTTTTCAAGGACG
ATCACAACGTCGTCGCAGCAGAAATGCTGTACACGAAAAATATCTTCTCGACCTACCCGGCCTCCTGGATACGCCGCTAT
CAGGAAGCCGGACATGTCGCCGCCGATCCTGTCGTCAAGCTAATCACGACCAGCAACCTCCCGATTCACTGGGATGCCGA
CGATTTGCAGGCAGCGCGGAGTCCCGTGTTTGATGAGGCCCGTGAGCACGGGCTGGCAACCGGTATCACGATACCGATCA
ACGGTTTCGACCACACTCGGGCTTTGTTTAGCGTGACGTCCGATCAGGCTCCAGAACGTTCGCAACGCCACACCGACGCG
ATATCCGGCCTCGCGGTACTGACTGCCCTGCATTTGCATGAAGCGGTACGGCGACTTGATGCGTCGATGTCCAACGCCCC
GATCCCTTCGCTGACGTCACGCGAGAAAGAATGCCTGCAATGGGCAGCGGCGGGCAAAACCTCGTGGGAAATCGCACGCA
TCCTCTCCGTCTCCGAGCGGACGGTGATCTTCCATATCGGGAATGCGACGAAGAAGCTCGGTGCCACAAACCGTCGTCAG
GCGGTGGCTCGTGCCATCAGCCTTCGCCTGATTGCTCCTTGA

Upstream 100 bases:

>100_bases
CTCGACAAGGTCTTTCCGCTGCTGAAAGACCGGAAACTGGATGCCCAGAACTCCCTCGACAGCGCAATCAAGGCGTTGTC
CGGGATTCTGAAATAAGGTC

Downstream 100 bases:

>100_bases
GCACCCTATAACTTCTTACAGCTACCTCCCCCGGTGGCTCGCCGCGACAATCTCCCCCAAATCAACACATTCTTCGGGGG
AAGTCAGCATGCAACCAATC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MVSPLYTFEGLLTAGSHAEIAAFMERHAGNLGYGRFFYSPLLVAGDARHFFKDDHNVVAAEMLYTKNIFSTYPASWIRRY
QEAGHVAADPVVKLITTSNLPIHWDADDLQAARSPVFDEAREHGLATGITIPINGFDHTRALFSVTSDQAPERSQRHTDA
ISGLAVLTALHLHEAVRRLDASMSNAPIPSLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQ
AVARAISLRLIAP

Sequences:

>Translated_253_residues
MVSPLYTFEGLLTAGSHAEIAAFMERHAGNLGYGRFFYSPLLVAGDARHFFKDDHNVVAAEMLYTKNIFSTYPASWIRRY
QEAGHVAADPVVKLITTSNLPIHWDADDLQAARSPVFDEAREHGLATGITIPINGFDHTRALFSVTSDQAPERSQRHTDA
ISGLAVLTALHLHEAVRRLDASMSNAPIPSLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQ
AVARAISLRLIAP
>Mature_253_residues
MVSPLYTFEGLLTAGSHAEIAAFMERHAGNLGYGRFFYSPLLVAGDARHFFKDDHNVVAAEMLYTKNIFSTYPASWIRRY
QEAGHVAADPVVKLITTSNLPIHWDADDLQAARSPVFDEAREHGLATGITIPINGFDHTRALFSVTSDQAPERSQRHTDA
ISGLAVLTALHLHEAVRRLDASMSNAPIPSLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQ
AVARAISLRLIAP

Specific function: Probable transcriptional activator. Binds to autoinducer molecule ODHL [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=184, Percent_Identity=34.2391304347826, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27841; Mature: 27841

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSPLYTFEGLLTAGSHAEIAAFMERHAGNLGYGRFFYSPLLVAGDARHFFKDDHNVVAA
CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEECCCHHHHCCCCCCHHH
EMLYTKNIFSTYPASWIRRYQEAGHVAADPVVKLITTSNLPIHWDADDLQAARSPVFDEA
HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEECCCCCEEECHHHHHHHHCCHHHHH
REHGLATGITIPINGFDHTRALFSVTSDQAPERSQRHTDAISGLAVLTALHLHEAVRRLD
HHCCCCCCEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASMSNAPIPSLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQ
HHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHH
AVARAISLRLIAP
HHHHHHHHEEECC
>Mature Secondary Structure
MVSPLYTFEGLLTAGSHAEIAAFMERHAGNLGYGRFFYSPLLVAGDARHFFKDDHNVVAA
CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEECCCHHHHCCCCCCHHH
EMLYTKNIFSTYPASWIRRYQEAGHVAADPVVKLITTSNLPIHWDADDLQAARSPVFDEA
HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEECCCCCEEECHHHHHHHHCCHHHHH
REHGLATGITIPINGFDHTRALFSVTSDQAPERSQRHTDAISGLAVLTALHLHEAVRRLD
HHCCCCCCEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASMSNAPIPSLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQ
HHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHH
AVARAISLRLIAP
HHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139920 [H]