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The map label for this gene is kdsD [H]

Identifier: 187927375

GI number: 187927375

Start: 282049

End: 283032

Strand: Reverse

Name: kdsD [H]

Synonym: Rpic_0268

Alternate gene names: 187927375

Gene position: 283032-282049 (Counterclockwise)

Preceding gene: 187927377

Following gene: 187927374

Centisome position: 7.18

GC content: 66.97

Gene sequence:

>984_bases
ATGATAGCGAATTTCAATCCAGACCGAGCGCTTGCGCTGGCGCAGCAAACCTTCGACATCGAAGCGCGAGCCGTACTCGG
TCTCAAGACCCAGGTGTCCGCCGACTTTGCGCGCGCGGTCGAAATGGTGCTCGGCTGCACCGGCCGCGTCGTCGTGTCAG
GCATGGGCAAATCGGGCCACGTGGCGCGCAAGATTGCCGCCACACTGGCCTCGACCGGCACGCCGGCCTTCTTCGTGCAC
CCGGCCGAAGCGAGCCATGGCGATCTCGGCATGGTCACCCGCGACGACGTTTTCATCGGCTTTTCCAATTCCGGCGAAGT
GTCGGAGCTGAACGTCATCCTGCCGCTGGTCAAGCGGATGGGCGCCAAGCTGATCGCCGTCACGGGCAACCCGGGGTCCT
CGCTCGGCAAGCATGCCGACGTGGTGCTCAACTCGCACGTCGACGTCGAAGCCTGTCCGCTGAACCTTGCCCCCACCGCC
AGCACTACCGCGCAGATCGCGCTGGGCGATGCGCTAGCCGTGGCCGTGCTCGACGCACGCGGCTTCGGTGCAGAAGACTT
CGCACGCTCGCATCCGGGCGGATCGCTCGGCCGCAAGCTGCTGACGCACGTGCGCGACGTCATGCGCGCCGGCGACGCCA
TCCCCCGCGTGGACCAAGACACGCCGCTGTCGCAGGCGCTGATGGAAATCACCCGCAAGGGCATGGCGATGACCGCCGTG
GTCGATGCCCAAGGCCACGCCGTGGGCGTGTTCACCGACGGCGACCTGCGCCGCCTGCTCGAGACCCCGCGCGACTGGCG
CACCGTGCCAATCAACGAGGTCATGCATCGCAACCCGCGCTCGATCGGCCCCGACCAGCTCGCCGTTGAAGCCGTCGAAG
TCATGGAAACGCACCGCATCAACCAGTTGCTGGTGGTCGATGCCGCCGGCCTGCTGGTGGGCGCGCTGCACATCCACGAC
CTGACGCGGGCCAAGGTCATCTGA

Upstream 100 bases:

>100_bases
AAACGGAGCGCCCGCACGCTCCGCCCACTCCCCGCAAGTCAAGTCCCAACGCGCCGCCAGCGGCCGAGGACTGTGTCAAT
CGTTGTTATACTTCGCCGCC

Downstream 100 bases:

>100_bases
CCAGCCCACGCCGCTGATGATCACCCTGGCCCCATTTCCCACCGACAGCGTCCACAGCAACATCGACGCGCGCTTTCCGC
AAGCAATGGAACGCGCCGCG

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIANFNPDRALALAQQTFDIEARAVLGLKTQVSADFARAVEMVLGCTGRVVVSGMGKSGHVARKIAATLASTGTPAFFVH
PAEASHGDLGMVTRDDVFIGFSNSGEVSELNVILPLVKRMGAKLIAVTGNPGSSLGKHADVVLNSHVDVEACPLNLAPTA
STTAQIALGDALAVAVLDARGFGAEDFARSHPGGSLGRKLLTHVRDVMRAGDAIPRVDQDTPLSQALMEITRKGMAMTAV
VDAQGHAVGVFTDGDLRRLLETPRDWRTVPINEVMHRNPRSIGPDQLAVEAVEVMETHRINQLLVVDAAGLLVGALHIHD
LTRAKVI

Sequences:

>Translated_327_residues
MIANFNPDRALALAQQTFDIEARAVLGLKTQVSADFARAVEMVLGCTGRVVVSGMGKSGHVARKIAATLASTGTPAFFVH
PAEASHGDLGMVTRDDVFIGFSNSGEVSELNVILPLVKRMGAKLIAVTGNPGSSLGKHADVVLNSHVDVEACPLNLAPTA
STTAQIALGDALAVAVLDARGFGAEDFARSHPGGSLGRKLLTHVRDVMRAGDAIPRVDQDTPLSQALMEITRKGMAMTAV
VDAQGHAVGVFTDGDLRRLLETPRDWRTVPINEVMHRNPRSIGPDQLAVEAVEVMETHRINQLLVVDAAGLLVGALHIHD
LTRAKVI
>Mature_327_residues
MIANFNPDRALALAQQTFDIEARAVLGLKTQVSADFARAVEMVLGCTGRVVVSGMGKSGHVARKIAATLASTGTPAFFVH
PAEASHGDLGMVTRDDVFIGFSNSGEVSELNVILPLVKRMGAKLIAVTGNPGSSLGKHADVVLNSHVDVEACPLNLAPTA
STTAQIALGDALAVAVLDARGFGAEDFARSHPGGSLGRKLLTHVRDVMRAGDAIPRVDQDTPLSQALMEITRKGMAMTAV
VDAQGHAVGVFTDGDLRRLLETPRDWRTVPINEVMHRNPRSIGPDQLAVEAVEVMETHRINQLLVVDAAGLLVGALHIHD
LTRAKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=313, Percent_Identity=52.0766773162939, Blast_Score=315, Evalue=3e-87,
Organism=Escherichia coli, GI87082151, Length=313, Percent_Identity=47.9233226837061, Blast_Score=283, Evalue=9e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34538; Mature: 34538

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIANFNPDRALALAQQTFDIEARAVLGLKTQVSADFARAVEMVLGCTGRVVVSGMGKSGH
CCCCCCCCHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
VARKIAATLASTGTPAFFVHPAEASHGDLGMVTRDDVFIGFSNSGEVSELNVILPLVKRM
HHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHC
GAKLIAVTGNPGSSLGKHADVVLNSHVDVEACPLNLAPTASTTAQIALGDALAVAVLDAR
CCEEEEEECCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCEEEEECCEEEEEEEECC
GFGAEDFARSHPGGSLGRKLLTHVRDVMRAGDAIPRVDQDTPLSQALMEITRKGMAMTAV
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
VDAQGHAVGVFTDGDLRRLLETPRDWRTVPINEVMHRNPRSIGPDQLAVEAVEVMETHRI
EECCCCEEEEEECHHHHHHHHCCCCCEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
NQLLVVDAAGLLVGALHIHDLTRAKVI
CEEEEEEHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIANFNPDRALALAQQTFDIEARAVLGLKTQVSADFARAVEMVLGCTGRVVVSGMGKSGH
CCCCCCCCHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
VARKIAATLASTGTPAFFVHPAEASHGDLGMVTRDDVFIGFSNSGEVSELNVILPLVKRM
HHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHC
GAKLIAVTGNPGSSLGKHADVVLNSHVDVEACPLNLAPTASTTAQIALGDALAVAVLDAR
CCEEEEEECCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCEEEEECCEEEEEEEECC
GFGAEDFARSHPGGSLGRKLLTHVRDVMRAGDAIPRVDQDTPLSQALMEITRKGMAMTAV
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
VDAQGHAVGVFTDGDLRRLLETPRDWRTVPINEVMHRNPRSIGPDQLAVEAVEVMETHRI
EECCCCEEEEEECHHHHHHHHCCCCCEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
NQLLVVDAAGLLVGALHIHDLTRAKVI
CEEEEEEHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]