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The map label for this gene is pdtaR [H]

Identifier: 187927345

GI number: 187927345

Start: 253722

End: 254360

Strand: Reverse

Name: pdtaR [H]

Synonym: Rpic_0238

Alternate gene names: 187927345

Gene position: 254360-253722 (Counterclockwise)

Preceding gene: 187927348

Following gene: 187927344

Centisome position: 6.45

GC content: 66.51

Gene sequence:

>639_bases
ATGCAAGCGAAACCGCCCACCCCATCCGCCCCGCCCGCTGCCAACCACCCGGCCGCGCCGATGCGCGTGCTGCTGGTGCG
CGATCCGCTCGACGCCGAACAGATCAATCTGGAGCTGATCCGCGCCGGGCTGGCCGAGGCCGGCTTCGTGGACGTCGGCT
TGGCGGATGCCGACCTGACGCTGCCCGAGCGCATCGCCGAGACCCAGCCCGACATGGTGATCGTCGCCTCCGAATCGGCC
GCGCGCGACACCATCGAGCACGTCTGCGTGGCCACGCAGCATGCTCCGCGCCCCATCGTGCTGTTCACCGACAACGACGA
CGCCACGCGCATCAAGACGGCGTTTGCCGCCGGCATCACCGCCTACATCGTCGACGGCATCAAGCCCACGCGTGTGAAGG
CCGTGCTGGACGTTGCCTATGCCCGCTTCGAACACGAGCGTGAGTTGCGTGCCGAGCTGGACACCGCCAAGACGCAACTC
GCCGAGCGCAAGGTCCTGGAGCGCGCCAAGGGCATGCTCATGAAGCAGATGAACCTGTCGGAAGACGACGCCTTCAAGCG
CCTGCGCAAGATGGCGATGGATCGCAACATCAAGCTGGTGGAAGCCGCACAACGCGTGATCGATGTGATGGCTGGCTGA

Upstream 100 bases:

>100_bases
GCCACCGCCCCCCGGCGACCGACGAGTTTGCGAGGATACACCCGCACCGCCCCGGCGCGGTTCTTGCATAAGCGACGTGC
ACCCTGCCCCACTTTGCACC

Downstream 100 bases:

>100_bases
GCGGTCGGGCCGCCGCCCAGTTTTGGTGCGCCGCACAACTCCGGCGCTGGAAACGCACCAGTCGCGCGCGGCGTCCCGAA
CCTCGCACGCCGAGTTCCGA

Product: response regulator receiver and ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MQAKPPTPSAPPAANHPAAPMRVLLVRDPLDAEQINLELIRAGLAEAGFVDVGLADADLTLPERIAETQPDMVIVASESA
ARDTIEHVCVATQHAPRPIVLFTDNDDATRIKTAFAAGITAYIVDGIKPTRVKAVLDVAYARFEHERELRAELDTAKTQL
AERKVLERAKGMLMKQMNLSEDDAFKRLRKMAMDRNIKLVEAAQRVIDVMAG

Sequences:

>Translated_212_residues
MQAKPPTPSAPPAANHPAAPMRVLLVRDPLDAEQINLELIRAGLAEAGFVDVGLADADLTLPERIAETQPDMVIVASESA
ARDTIEHVCVATQHAPRPIVLFTDNDDATRIKTAFAAGITAYIVDGIKPTRVKAVLDVAYARFEHERELRAELDTAKTQL
AERKVLERAKGMLMKQMNLSEDDAFKRLRKMAMDRNIKLVEAAQRVIDVMAG
>Mature_212_residues
MQAKPPTPSAPPAANHPAAPMRVLLVRDPLDAEQINLELIRAGLAEAGFVDVGLADADLTLPERIAETQPDMVIVASESA
ARDTIEHVCVATQHAPRPIVLFTDNDDATRIKTAFAAGITAYIVDGIKPTRVKAVLDVAYARFEHERELRAELDTAKTQL
AERKVLERAKGMLMKQMNLSEDDAFKRLRKMAMDRNIKLVEAAQRVIDVMAG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23243; Mature: 23243

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAKPPTPSAPPAANHPAAPMRVLLVRDPLDAEQINLELIRAGLAEAGFVDVGLADADLT
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCC
LPERIAETQPDMVIVASESAARDTIEHVCVATQHAPRPIVLFTDNDDATRIKTAFAAGIT
CHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH
AYIVDGIKPTRVKAVLDVAYARFEHERELRAELDTAKTQLAERKVLERAKGMLMKQMNLS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EDDAFKRLRKMAMDRNIKLVEAAQRVIDVMAG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQAKPPTPSAPPAANHPAAPMRVLLVRDPLDAEQINLELIRAGLAEAGFVDVGLADADLT
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCC
LPERIAETQPDMVIVASESAARDTIEHVCVATQHAPRPIVLFTDNDDATRIKTAFAAGIT
CHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH
AYIVDGIKPTRVKAVLDVAYARFEHERELRAELDTAKTQLAERKVLERAKGMLMKQMNLS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EDDAFKRLRKMAMDRNIKLVEAAQRVIDVMAG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]