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The map label for this gene is yijO [C]

Identifier: 187927193

GI number: 187927193

Start: 94401

End: 95123

Strand: Reverse

Name: yijO [C]

Synonym: Rpic_0083

Alternate gene names: 187927193

Gene position: 95123-94401 (Counterclockwise)

Preceding gene: 187927194

Following gene: 187927192

Centisome position: 2.41

GC content: 69.99

Gene sequence:

>723_bases
ATGCTGGACTTCCGTACCTACGGCCTCGCCGCGCCCCCACACTCGCACGACTTCATGCAAGTCGTGATGCCCGCACGCGG
CATCCTCGAGATGGACGTGGACGGCCGCGGCGGCCGCGTCGACACGCACCACGCCGCGCTCATCCCGGCTGGCGCCACGC
ATGCGTTTGAAGCCACGGGCGCCAACCGTTTCATCGTGTTCGACATTCCCGGCCAGACCGTGGACGCCCCCAGCCTGGGC
GGCCTGGCCGATCGCGTGTTCTTTCCACTTACGCCGGGCCTGCGCGCACTGACGACCTGGCTGCAGGACGCGCCCATCGT
CGATGCCGTACTGGCCAATGCGTGGTCGTCTCTCGCGCTGGCGACGCTCGCGGCGCATCCGGTCAACCAAGCCGCGCAGA
TCCGCGCACGCCCCGACGCGCGTGCCGAGCGCGCATGGCACGCCATCGAGCACCGCTACGCCGAGCCGCTCACCGTCGAT
GCGCTTGCCGCCGAGGCGGGCGTCAGTGCGCGTCGCCTCGCCACGCTGTTCCGTGCCACCTATGGCACCACGCTGCATGC
GCATCTGGCCCAGGTACGGCTGCGGCATGCATTGACGCTGCTGGAAACCACCGCCTTGCCCATCGCCGAGATTGCCGCAC
GCACCGGCTACTACGACCAGAGCGCCCTCACGCGCCACCTCAAGGCCGCACACGGCGTCACGCCCGCAGCGGTGCGCCGC
TAA

Upstream 100 bases:

>100_bases
TCGGCATCGAGATCTCAATACAGGAGTACGCTACACGCACGAAAAATCCCCGGGGAAAATGTGACATGAAGGTTATATCC
ACCGGGTTGTCAAATTGATC

Downstream 100 bases:

>100_bases
CCCGGGCCATTTCCGTTTTTGCCAAAGCGCAGCCGTCTTCGCCAAGACGCGCGACACGCGCACGCGCAGAGTGCCGGTTC
GATTGATCTTTTCGGACAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator AraC/XylS Family; AraC Family Transcription Regulator; AraC-Like Transcription Regulator; Helix-Turn-Helix AraC Type; Transcriptional Regulator Protein

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLDFRTYGLAAPPHSHDFMQVVMPARGILEMDVDGRGGRVDTHHAALIPAGATHAFEATGANRFIVFDIPGQTVDAPSLG
GLADRVFFPLTPGLRALTTWLQDAPIVDAVLANAWSSLALATLAAHPVNQAAQIRARPDARAERAWHAIEHRYAEPLTVD
ALAAEAGVSARRLATLFRATYGTTLHAHLAQVRLRHALTLLETTALPIAEIAARTGYYDQSALTRHLKAAHGVTPAAVRR

Sequences:

>Translated_240_residues
MLDFRTYGLAAPPHSHDFMQVVMPARGILEMDVDGRGGRVDTHHAALIPAGATHAFEATGANRFIVFDIPGQTVDAPSLG
GLADRVFFPLTPGLRALTTWLQDAPIVDAVLANAWSSLALATLAAHPVNQAAQIRARPDARAERAWHAIEHRYAEPLTVD
ALAAEAGVSARRLATLFRATYGTTLHAHLAQVRLRHALTLLETTALPIAEIAARTGYYDQSALTRHLKAAHGVTPAAVRR
>Mature_240_residues
MLDFRTYGLAAPPHSHDFMQVVMPARGILEMDVDGRGGRVDTHHAALIPAGATHAFEATGANRFIVFDIPGQTVDAPSLG
GLADRVFFPLTPGLRALTTWLQDAPIVDAVLANAWSSLALATLAAHPVNQAAQIRARPDARAERAWHAIEHRYAEPLTVD
ALAAEAGVSARRLATLFRATYGTTLHAHLAQVRLRHALTLLETTALPIAEIAARTGYYDQSALTRHLKAAHGVTPAAVRR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25787; Mature: 25787

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFRTYGLAAPPHSHDFMQVVMPARGILEMDVDGRGGRVDTHHAALIPAGATHAFEATG
CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCC
ANRFIVFDIPGQTVDAPSLGGLADRVFFPLTPGLRALTTWLQDAPIVDAVLANAWSSLAL
CCEEEEEECCCCCCCCCCCCCHHHHHEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
ATLAAHPVNQAAQIRARPDARAERAWHAIEHRYAEPLTVDALAAEAGVSARRLATLFRAT
HHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHH
YGTTLHAHLAQVRLRHALTLLETTALPIAEIAARTGYYDQSALTRHLKAAHGVTPAAVRR
HCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure
MLDFRTYGLAAPPHSHDFMQVVMPARGILEMDVDGRGGRVDTHHAALIPAGATHAFEATG
CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCC
ANRFIVFDIPGQTVDAPSLGGLADRVFFPLTPGLRALTTWLQDAPIVDAVLANAWSSLAL
CCEEEEEECCCCCCCCCCCCCHHHHHEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
ATLAAHPVNQAAQIRARPDARAERAWHAIEHRYAEPLTVDALAAEAGVSARRLATLFRAT
HHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHH
YGTTLHAHLAQVRLRHALTLLETTALPIAEIAARTGYYDQSALTRHLKAAHGVTPAAVRR
HCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA