Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is katE [H]
Identifier: 187736548
GI number: 187736548
Start: 2515550
End: 2517805
Strand: Direct
Name: katE [H]
Synonym: Amuc_2070
Alternate gene names: 187736548
Gene position: 2515550-2517805 (Clockwise)
Preceding gene: 187736547
Following gene: 187736551
Centisome position: 94.42
GC content: 55.05
Gene sequence:
>2256_bases ATGAAAAAAAAGAAACCGCCCATGGAAGACAGCGCCGCCCCTTTTCCCAATGGAAAAGAAGCTGCTCCCCATTATACGGA TACAATTGATCCGGAATTGATCAAACCCACTCCAAAACCTACGCCGCCCAATGCGGAACCTTCCGCGCCCGGTTCCATGA AGATGCCGGATAACGCTACGGAAAAAATCAGGGAGCTGGATGCCATGCGCTCCAACGGCATGGGACAGGCCCTCACAAGC AACCTGGGAGTTAAAATATCCGATGATCAAAACACACTTAAAGCAGGAAGCAGAGGCCCCTCTCTGCTTGAAGACTTCCA CTTTCTGGAGAAAATGGCTCATTTTGACCAGGAGCGGATACCGGAACGCGTGGTTCACGCAAGAGGTTCCGGGGCACATG GTTATTTTCAGGTGTACAAATCCCTTTCCAAGTACACCAAAGCGGCTTTTTTGCAGGATCCGGGAGAAAAAACCCCGGTC TTTGTGCGTTTTTCCACCGTGCAGGGCTTCAGAGGATCTCCGGATACAGTAAGGGATATCCGCGGTTGGGCTACCAAATT CTATACCAAGGAAGGCAACTATGATCTGGTAGGCAATAACACGCCCGTCTTCTTCATTCAGGATGCCATCAAATTTCCGG ATTTCGTTCATGCCGTCAAACCGGAACCCCACAATGAAATGCCCCAGGGGCAGACGGCCCATGACTCTTTCTGGGACTAC GTCTCCCTGCAGCCGGAAACTCTGCATAACGTCATGTGGGCCATGTCGGACCGCGGCATCCCCAGAAGCTTCCGTACGAT GGAAGGGTTCGGCATCCATACGTACAAACTGGTCAATGAAGAAGGAAAAAGCACTTTCGTCCGTTTCCACTGGAAACCGG TGTACGGGAAAAAATCCCTGGTGTGGGATGAAGCCCAGGTATTGACAGGACGCGATCCTGACTTCCACCGCAAGGATCTC TGGCAATCCATTGAAGCCGGAGATTATCCGGAATACGAGCTGGGTCTGCAGCTCATCCCGGAAGAAGACGCAGACCAGCT CGACTTCGATATTCTGGACGCTACCAAGCTCATTCCGGAAGCTCTGGTTCCCGTGGAAATCGTCGGGAAAATGGTGCTGA ACCGCAACCCGGACAACTTTTTTGCGGAAACGGAACAGGTAGCCTTCTGCCCCGCCAATATCGTGCCGGGCATTGATTTT TCAGACGATCCGCTGCTCCAGGGCCGTATTTTCTCTTACAGCGATACCCAGCGGCACCGGCTGGGAGGAGCCAATTTCAC GGAAATTCCCATCAACCGCCCCATTTGCCCCTTCCACAACAACCAGAGGGACGGCTTCCACCGTATGCAGATAGACGCCT CTCCGGCCAACTATGATCCCAATTCCATCGGGAACAACTGGCCGAGAGAAACGCCCCCGGAGAAAGGCGGCTTCACCACC AGCCCCCAGACGGTAAGCGGTGTCAAGGAACGTCTGCGGAACCCCTCCTTCGCGGAATACTATTCCCACCCCCGGTTGTT CTGGATGAGTCAAACTCCGGTGGAACAGGAGCACATTATCAACGCGTTCAGCTTTGAGCTGGGCAAGGTGACGCGCCCCT ATATTCGGGAACGCGTGGTGGACCTTCTGACACGCATTGATCCGGACCTGGCAAGCGGAGTGGCCCGCAACCTGGGAATT CAACTCACCAGGGAACAGCTCAGCAGGGAACTTCCCAGGCCCGTCTGCGGCCTGGAACAAGATCCGTCATTGAGCCTGTA TGCCCATACGGACGGCAACCTCAAAGGCCTCCGCGTCTCTTTACTGGCAGCGGACGGCGTCAGCCTGAAATCCGTGAAAG AAATCTGCGAGGCCCTGCATGAAGAAGGCATCCACCCCCAAATCATTGCCCCGCACATGGGAAGCGTAACAACGGAAGAA GGGGAAGATCTGCCTGTTAACGGGACTCTGTCCGGCACTCCTTCCGTCCTGTTTGACTCCGTCATCGTCCCGGAAGGAGA ACAAAGCATCGCAGCGCTCCTGAAAGACGGAGATGCCAAGTACCATTTGCGCCAGGCCTACAGGCACCTGAAAGCCATCG GACTGCCCGGCAACGCCAAAGCCATGCTTGAGGCAGCCTCCCTGCCCCAGGATATGGATGATGCCGGACTGCTCATGCCG AAGGACACCAAATCCCTGATGCCCTCCTTCATCACGGCCATGAAACAGCACCGCGTCTGGAGCCGCGAGCCTAAAACCCT TGATTTCGGCGCCTAG
Upstream 100 bases:
>100_bases CGGAGAAATACTGATGACAAAACAGGACGGAACATCCCCGGAAAAAGGGAAGTCGAACTATTACCCACATAGAAAAATCC GGTCCCTCATGAACAAGCCA
Downstream 100 bases:
>100_bases ATTCGTTCCTTATTCAGGAACCGCTTCCCAATACAGGCTGCCCCGTCGAAAGGCGCGGCAGCCGTTTTTATTAAAAAATC CGAGGAGTTATAGCATCATA
Product: hydroperoxidase II
Products: NA
Alternate protein names: Hydroxyperoxidase II [H]
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MKKKKPPMEDSAAPFPNGKEAAPHYTDTIDPELIKPTPKPTPPNAEPSAPGSMKMPDNATEKIRELDAMRSNGMGQALTS NLGVKISDDQNTLKAGSRGPSLLEDFHFLEKMAHFDQERIPERVVHARGSGAHGYFQVYKSLSKYTKAAFLQDPGEKTPV FVRFSTVQGFRGSPDTVRDIRGWATKFYTKEGNYDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEMPQGQTAHDSFWDY VSLQPETLHNVMWAMSDRGIPRSFRTMEGFGIHTYKLVNEEGKSTFVRFHWKPVYGKKSLVWDEAQVLTGRDPDFHRKDL WQSIEAGDYPEYELGLQLIPEEDADQLDFDILDATKLIPEALVPVEIVGKMVLNRNPDNFFAETEQVAFCPANIVPGIDF SDDPLLQGRIFSYSDTQRHRLGGANFTEIPINRPICPFHNNQRDGFHRMQIDASPANYDPNSIGNNWPRETPPEKGGFTT SPQTVSGVKERLRNPSFAEYYSHPRLFWMSQTPVEQEHIINAFSFELGKVTRPYIRERVVDLLTRIDPDLASGVARNLGI QLTREQLSRELPRPVCGLEQDPSLSLYAHTDGNLKGLRVSLLAADGVSLKSVKEICEALHEEGIHPQIIAPHMGSVTTEE GEDLPVNGTLSGTPSVLFDSVIVPEGEQSIAALLKDGDAKYHLRQAYRHLKAIGLPGNAKAMLEAASLPQDMDDAGLLMP KDTKSLMPSFITAMKQHRVWSREPKTLDFGA
Sequences:
>Translated_751_residues MKKKKPPMEDSAAPFPNGKEAAPHYTDTIDPELIKPTPKPTPPNAEPSAPGSMKMPDNATEKIRELDAMRSNGMGQALTS NLGVKISDDQNTLKAGSRGPSLLEDFHFLEKMAHFDQERIPERVVHARGSGAHGYFQVYKSLSKYTKAAFLQDPGEKTPV FVRFSTVQGFRGSPDTVRDIRGWATKFYTKEGNYDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEMPQGQTAHDSFWDY VSLQPETLHNVMWAMSDRGIPRSFRTMEGFGIHTYKLVNEEGKSTFVRFHWKPVYGKKSLVWDEAQVLTGRDPDFHRKDL WQSIEAGDYPEYELGLQLIPEEDADQLDFDILDATKLIPEALVPVEIVGKMVLNRNPDNFFAETEQVAFCPANIVPGIDF SDDPLLQGRIFSYSDTQRHRLGGANFTEIPINRPICPFHNNQRDGFHRMQIDASPANYDPNSIGNNWPRETPPEKGGFTT SPQTVSGVKERLRNPSFAEYYSHPRLFWMSQTPVEQEHIINAFSFELGKVTRPYIRERVVDLLTRIDPDLASGVARNLGI QLTREQLSRELPRPVCGLEQDPSLSLYAHTDGNLKGLRVSLLAADGVSLKSVKEICEALHEEGIHPQIIAPHMGSVTTEE GEDLPVNGTLSGTPSVLFDSVIVPEGEQSIAALLKDGDAKYHLRQAYRHLKAIGLPGNAKAMLEAASLPQDMDDAGLLMP KDTKSLMPSFITAMKQHRVWSREPKTLDFGA >Mature_751_residues MKKKKPPMEDSAAPFPNGKEAAPHYTDTIDPELIKPTPKPTPPNAEPSAPGSMKMPDNATEKIRELDAMRSNGMGQALTS NLGVKISDDQNTLKAGSRGPSLLEDFHFLEKMAHFDQERIPERVVHARGSGAHGYFQVYKSLSKYTKAAFLQDPGEKTPV FVRFSTVQGFRGSPDTVRDIRGWATKFYTKEGNYDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEMPQGQTAHDSFWDY VSLQPETLHNVMWAMSDRGIPRSFRTMEGFGIHTYKLVNEEGKSTFVRFHWKPVYGKKSLVWDEAQVLTGRDPDFHRKDL WQSIEAGDYPEYELGLQLIPEEDADQLDFDILDATKLIPEALVPVEIVGKMVLNRNPDNFFAETEQVAFCPANIVPGIDF SDDPLLQGRIFSYSDTQRHRLGGANFTEIPINRPICPFHNNQRDGFHRMQIDASPANYDPNSIGNNWPRETPPEKGGFTT SPQTVSGVKERLRNPSFAEYYSHPRLFWMSQTPVEQEHIINAFSFELGKVTRPYIRERVVDLLTRIDPDLASGVARNLGI QLTREQLSRELPRPVCGLEQDPSLSLYAHTDGNLKGLRVSLLAADGVSLKSVKEICEALHEEGIHPQIIAPHMGSVTTEE GEDLPVNGTLSGTPSVLFDSVIVPEGEQSIAALLKDGDAKYHLRQAYRHLKAIGLPGNAKAMLEAASLPQDMDDAGLLMP KDTKSLMPSFITAMKQHRVWSREPKTLDFGA
Specific function: Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide [H]
COG id: COG0753
COG function: function code P; Catalase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the catalase family. HPII subfamily [H]
Homologues:
Organism=Homo sapiens, GI4557014, Length=503, Percent_Identity=42.1471172962227, Blast_Score=382, Evalue=1e-106, Organism=Escherichia coli, GI48994891, Length=737, Percent_Identity=63.3649932157395, Blast_Score=957, Evalue=0.0, Organism=Caenorhabditis elegans, GI71998444, Length=484, Percent_Identity=45.2479338842975, Blast_Score=407, Evalue=1e-114, Organism=Caenorhabditis elegans, GI25147792, Length=488, Percent_Identity=44.0573770491803, Blast_Score=405, Evalue=1e-113, Organism=Caenorhabditis elegans, GI25151141, Length=500, Percent_Identity=43.6, Blast_Score=404, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6320462, Length=495, Percent_Identity=36.7676767676768, Blast_Score=321, Evalue=3e-88, Organism=Saccharomyces cerevisiae, GI6321525, Length=508, Percent_Identity=36.8110236220472, Blast_Score=318, Evalue=1e-87, Organism=Drosophila melanogaster, GI17981717, Length=491, Percent_Identity=40.122199592668, Blast_Score=360, Evalue=2e-99, Organism=Drosophila melanogaster, GI19920968, Length=480, Percent_Identity=39.7916666666667, Blast_Score=359, Evalue=3e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002226 - InterPro: IPR020835 - InterPro: IPR010582 - InterPro: IPR018028 - InterPro: IPR011614 [H]
Pfam domain/function: PF00199 Catalase; PF06628 Catalase-rel [H]
EC number: =1.11.1.6 [H]
Molecular weight: Translated: 84036; Mature: 84036
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: PS00437 CATALASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKKPPMEDSAAPFPNGKEAAPHYTDTIDPELIKPTPKPTPPNAEPSAPGSMKMPDNAT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHH EKIRELDAMRSNGMGQALTSNLGVKISDDQNTLKAGSRGPSLLEDFHFLEKMAHFDQERI HHHHHHHHHHCCCCCHHHHCCCCEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHH PERVVHARGSGAHGYFQVYKSLSKYTKAAFLQDPGEKTPVFVRFSTVQGFRGSPDTVRDI HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHH RGWATKFYTKEGNYDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEMPQGQTAHDSFWDY HHHHHHEEECCCCEEEECCCCCEEEEECHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHCE VSLQPETLHNVMWAMSDRGIPRSFRTMEGFGIHTYKLVNEEGKSTFVRFHWKPVYGKKSL EECCHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCE VWDEAQVLTGRDPDFHRKDLWQSIEAGDYPEYELGLQLIPEEDADQLDFDILDATKLIPE EECCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH ALVPVEIVGKMVLNRNPDNFFAETEQVAFCPANIVPGIDFSDDPLLQGRIFSYSDTQRHR HCCCHHHHHHHHHCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHH LGGANFTEIPINRPICPFHNNQRDGFHRMQIDASPANYDPNSIGNNWPRETPPEKGGFTT CCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC SPQTVSGVKERLRNPSFAEYYSHPRLFWMSQTPVEQEHIINAFSFELGKVTRPYIRERVV CCHHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH DLLTRIDPDLASGVARNLGIQLTREQLSRELPRPVCGLEQDPSLSLYAHTDGNLKGLRVS HHHHHCCHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEE LLAADGVSLKSVKEICEALHEEGIHPQIIAPHMGSVTTEEGEDLPVNGTLSGTPSVLFDS EEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC VIVPEGEQSIAALLKDGDAKYHLRQAYRHLKAIGLPGNAKAMLEAASLPQDMDDAGLLMP EECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC KDTKSLMPSFITAMKQHRVWSREPKTLDFGA CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKKKKPPMEDSAAPFPNGKEAAPHYTDTIDPELIKPTPKPTPPNAEPSAPGSMKMPDNAT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHH EKIRELDAMRSNGMGQALTSNLGVKISDDQNTLKAGSRGPSLLEDFHFLEKMAHFDQERI HHHHHHHHHHCCCCCHHHHCCCCEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHH PERVVHARGSGAHGYFQVYKSLSKYTKAAFLQDPGEKTPVFVRFSTVQGFRGSPDTVRDI HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHH RGWATKFYTKEGNYDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEMPQGQTAHDSFWDY HHHHHHEEECCCCEEEECCCCCEEEEECHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHCE VSLQPETLHNVMWAMSDRGIPRSFRTMEGFGIHTYKLVNEEGKSTFVRFHWKPVYGKKSL EECCHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCE VWDEAQVLTGRDPDFHRKDLWQSIEAGDYPEYELGLQLIPEEDADQLDFDILDATKLIPE EECCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH ALVPVEIVGKMVLNRNPDNFFAETEQVAFCPANIVPGIDFSDDPLLQGRIFSYSDTQRHR HCCCHHHHHHHHHCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHH LGGANFTEIPINRPICPFHNNQRDGFHRMQIDASPANYDPNSIGNNWPRETPPEKGGFTT CCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC SPQTVSGVKERLRNPSFAEYYSHPRLFWMSQTPVEQEHIINAFSFELGKVTRPYIRERVV CCHHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH DLLTRIDPDLASGVARNLGIQLTREQLSRELPRPVCGLEQDPSLSLYAHTDGNLKGLRVS HHHHHCCHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEE LLAADGVSLKSVKEICEALHEEGIHPQIIAPHMGSVTTEEGEDLPVNGTLSGTPSVLFDS EEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC VIVPEGEQSIAALLKDGDAKYHLRQAYRHLKAIGLPGNAKAMLEAASLPQDMDDAGLLMP EECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC KDTKSLMPSFITAMKQHRVWSREPKTLDFGA CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1987146; 9097039; 9278503; 9144772; 7663946; 10091651; 11455600 [H]