Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736402
Identifier: 187736402
GI number: 187736402
Start: 2331076
End: 2331825
Strand: Direct
Name: 187736402
Synonym: Amuc_1920
Alternate gene names: NA
Gene position: 2331076-2331825 (Clockwise)
Preceding gene: 187736401
Following gene: 187736404
Centisome position: 87.5
GC content: 60.27
Gene sequence:
>750_bases ATGCTTTTTCTGCGCCTGCTTCCCCTGATATTGTGCTTTTCCGGCCTGGTTCACGCAGAACACCGCGTCTTCACCAGGAA GGACGGATTTTTGTCCATGCGGGACAAGCTGAACGTGTATTTTTTCCGTTCTGATACGCACCGCCTGCTGGTAAGGGATG AAGGGAGCGTCAAAACGCCCCGGTACGGCTCCCTGGACAAGGCCATGAGGAAAAGCCCCTGCGTGGCCGGAGTCAACGGA GGATTCTTCAGCGCAGACGCGGGGGGAACTCCCCTGGGCCTGGTCGTCCAGGACGGCAAACGGCTTTCTCCGCTGGCCAC GGGGTCCTTCGCTGTTTCCGGTGTCGTTTACGAAGGAGGCAGAGACGGATTAACCCTGGTCCGCAGTTCCGTGCTGAGGC GCATGAGAAGACTGCCGGCCATGCAGGCGGCTATCCAAGGGGGGCCCTTTCTGGTGGAGAACGGCTCCGCCGTAAAAGGG CTTAACGCGCAGAAGTCCACCTACCGCACCTTCATTGCCACGGACGGCGGCAGGAGGTGGTGCATCGGCGTTTCCTCCTC CCTGACTCTGAAGGAGCTGGCAGCCTGGCTGGCGGCTCCCGGGGCATTGGGGAATTTCCGGGTGGAAACGGCCCTGAACC TGGACGGCGGCTCTTCTTCCGCCTTCTGGTGCCATGAAACAGGCATTTCCTACCCTGCGTTCAAACAAGTCAGGAATTAT CTGGGCGTAGCCCCCGTGGAACACCGGTAA
Upstream 100 bases:
>100_bases GCCGCCTGCAAGGCTGCGTTGTCTGGCCGGGCGTATGCGTGCCTTCCGGCACTTGCGCGGAACGCCGGATTTTCTATTGT TCCCCCACCGATTACTGACG
Downstream 100 bases:
>100_bases ACTCCGTTCTCCACGGGGCCATGGACGCGTTTCCCTGCGCCTATCCTGCGCAGCAACAGAGCCGCGAACACCAGGAAACA AACCAGGACGGCCCAGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MLFLRLLPLILCFSGLVHAEHRVFTRKDGFLSMRDKLNVYFFRSDTHRLLVRDEGSVKTPRYGSLDKAMRKSPCVAGVNG GFFSADAGGTPLGLVVQDGKRLSPLATGSFAVSGVVYEGGRDGLTLVRSSVLRRMRRLPAMQAAIQGGPFLVENGSAVKG LNAQKSTYRTFIATDGGRRWCIGVSSSLTLKELAAWLAAPGALGNFRVETALNLDGGSSSAFWCHETGISYPAFKQVRNY LGVAPVEHR
Sequences:
>Translated_249_residues MLFLRLLPLILCFSGLVHAEHRVFTRKDGFLSMRDKLNVYFFRSDTHRLLVRDEGSVKTPRYGSLDKAMRKSPCVAGVNG GFFSADAGGTPLGLVVQDGKRLSPLATGSFAVSGVVYEGGRDGLTLVRSSVLRRMRRLPAMQAAIQGGPFLVENGSAVKG LNAQKSTYRTFIATDGGRRWCIGVSSSLTLKELAAWLAAPGALGNFRVETALNLDGGSSSAFWCHETGISYPAFKQVRNY LGVAPVEHR >Mature_249_residues MLFLRLLPLILCFSGLVHAEHRVFTRKDGFLSMRDKLNVYFFRSDTHRLLVRDEGSVKTPRYGSLDKAMRKSPCVAGVNG GFFSADAGGTPLGLVVQDGKRLSPLATGSFAVSGVVYEGGRDGLTLVRSSVLRRMRRLPAMQAAIQGGPFLVENGSAVKG LNAQKSTYRTFIATDGGRRWCIGVSSSLTLKELAAWLAAPGALGNFRVETALNLDGGSSSAFWCHETGISYPAFKQVRNY LGVAPVEHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26985; Mature: 26985
Theoretical pI: Translated: 10.64; Mature: 10.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFLRLLPLILCFSGLVHAEHRVFTRKDGFLSMRDKLNVYFFRSDTHRLLVRDEGSVKTP CHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCEEEEEEECCCEEEEEECCCCCCCC RYGSLDKAMRKSPCVAGVNGGFFSADAGGTPLGLVVQDGKRLSPLATGSFAVSGVVYEGG CCCCHHHHHHCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECC RDGLTLVRSSVLRRMRRLPAMQAAIQGGPFLVENGSAVKGLNAQKSTYRTFIATDGGRRW CCCHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCEECCCCCCCCEEEEEEEECCCCEE CIGVSSSLTLKELAAWLAAPGALGNFRVETALNLDGGSSSAFWCHETGISYPAFKQVRNY EEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHH LGVAPVEHR HCCCCCCCC >Mature Secondary Structure MLFLRLLPLILCFSGLVHAEHRVFTRKDGFLSMRDKLNVYFFRSDTHRLLVRDEGSVKTP CHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCEEEEEEECCCEEEEEECCCCCCCC RYGSLDKAMRKSPCVAGVNGGFFSADAGGTPLGLVVQDGKRLSPLATGSFAVSGVVYEGG CCCCHHHHHHCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECC RDGLTLVRSSVLRRMRRLPAMQAAIQGGPFLVENGSAVKGLNAQKSTYRTFIATDGGRRW CCCHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCEECCCCCCCCEEEEEEEECCCCEE CIGVSSSLTLKELAAWLAAPGALGNFRVETALNLDGGSSSAFWCHETGISYPAFKQVRNY EEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHH LGVAPVEHR HCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA