Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736360
Identifier: 187736360
GI number: 187736360
Start: 2283119
End: 2283634
Strand: Reverse
Name: 187736360
Synonym: Amuc_1877
Alternate gene names: NA
Gene position: 2283634-2283119 (Counterclockwise)
Preceding gene: 187736361
Following gene: 187736354
Centisome position: 85.72
GC content: 57.56
Gene sequence:
>516_bases GTGACGCCCGGACTGACGAACCACACCGGGTGGCCGTCGCGTGGCCGCCGGAAATCACAATGTCGCTGGGCACTTCCGAC CTGGAATAGCCGCCAAGCACGATGCTGTGCCCGCAGCCGTCTTCCACATACCCCCCTGCCGATGCCTATGCAGAAGGTCC CCCTCGATCCGGGAACCCATGCCCGCGCAGAAGGAATAGGCCGTGGCCGTATGGAGCTTCTCCGATTCATTGGACGTATT ACTCTGATAACCCAGGGCAATCCCCATGTGACAGTGGTCCGTATTGGACCAGGAACCTACGGAAACGCAGGAATTCCCTA CTTTAATATGATCCCCCAGGGCGGTTCCAGCGGAGTTGGTGCCCACGAACGTGGAACCCACAACGGTACCCCGGTCGTCT CTGGTGGAAGAGGTAACCTATCACAACATTGTCCGTGCCATTGGCGGCACTGGCATTTGTTCCGATTACAACGTTTCTGT CCGCAGAAAGGGCGGACGTATCATCTAAATTCATAG
Upstream 100 bases:
>100_bases TCCGGCTTCGGAGGGATAACACTGGCCTACAATGCCATCACGAAAGAGGAAGTTGTGGAAATCTAAAAGGGCTTGCCTGG CCAGCATCATCTCCCCGCTG
Downstream 100 bases:
>100_bases AATGGCATTTGCAGCCATTTCCGTTCCCGGGGCAAGGAGCATGAAACGTTGTAATCGGGGGCCCTCCCGTCACAGATCCC GGCGGATGGCGTCCACCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MTPGLTNHTGWPSRGRRKSQCRWALPTWNSRQARCCARSRLPHTPLPMPMQKVPLDPGTHARAEGIGRGRMELLRFIGRI TLITQGNPHVTVVRIGPGTYGNAGIPYFNMIPQGGSSGVGAHERGTHNGTPVVSGGRGNLSQHCPCHWRHWHLFRLQRFC PQKGRTYHLNS
Sequences:
>Translated_171_residues MTPGLTNHTGWPSRGRRKSQCRWALPTWNSRQARCCARSRLPHTPLPMPMQKVPLDPGTHARAEGIGRGRMELLRFIGRI TLITQGNPHVTVVRIGPGTYGNAGIPYFNMIPQGGSSGVGAHERGTHNGTPVVSGGRGNLSQHCPCHWRHWHLFRLQRFC PQKGRTYHLNS >Mature_170_residues TPGLTNHTGWPSRGRRKSQCRWALPTWNSRQARCCARSRLPHTPLPMPMQKVPLDPGTHARAEGIGRGRMELLRFIGRIT LITQGNPHVTVVRIGPGTYGNAGIPYFNMIPQGGSSGVGAHERGTHNGTPVVSGGRGNLSQHCPCHWRHWHLFRLQRFCP QKGRTYHLNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19065; Mature: 18934
Theoretical pI: Translated: 12.15; Mature: 12.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPGLTNHTGWPSRGRRKSQCRWALPTWNSRQARCCARSRLPHTPLPMPMQKVPLDPGTH CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCC ARAEGIGRGRMELLRFIGRITLITQGNPHVTVVRIGPGTYGNAGIPYFNMIPQGGSSGVG CHHCCCCCCHHHHHHHHCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCC AHERGTHNGTPVVSGGRGNLSQHCPCHWRHWHLFRLQRFCPQKGRTYHLNS CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCC >Mature Secondary Structure TPGLTNHTGWPSRGRRKSQCRWALPTWNSRQARCCARSRLPHTPLPMPMQKVPLDPGTH CCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCC ARAEGIGRGRMELLRFIGRITLITQGNPHVTVVRIGPGTYGNAGIPYFNMIPQGGSSGVG CHHCCCCCCHHHHHHHHCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCC AHERGTHNGTPVVSGGRGNLSQHCPCHWRHWHLFRLQRFCPQKGRTYHLNS CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA