Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736310
Identifier: 187736310
GI number: 187736310
Start: 2213437
End: 2215074
Strand: Direct
Name: 187736310
Synonym: Amuc_1823
Alternate gene names: NA
Gene position: 2213437-2215074 (Clockwise)
Preceding gene: 187736309
Following gene: 187736311
Centisome position: 83.08
GC content: 52.32
Gene sequence:
>1638_bases ATGAATAATTATATACCACTGAACAAGGCGGTCGGTCCGAAGCTTATCTGCGACGGGGAGCAGGCTCTCATCCCGCAGAA ACTCGGAGTTGACGCGATGGAGTTCAACTTTGACGGTTCGGCGTGCGAACACGCCACTTGCGCCGGAGCGCCGGAAATGT TCATCAAGGTCGAGGAAGACGGCCTGTATTATTTCGGCGTGGAAGCCGACGACACAGGCAGCATCTCCATTGCCAACGAG AAACTTTGTGAGAAGGATGGAACGAAGCCCAACGGCAAGCTGAATCTGGCAACGGGTGCCAGGTACCTGAAAGCTGGCTA TTACAAGGTGGCCTTGTCTTACACGAATAATGCCTACACCCCCGTCAGCAACAACGCTGCCGCGTTCAATGTGACGATGG ACAGGGAACCCATTCAGGAAGGGAAGTACGAAGGCAACTCGACGATGAAACGCGAATTCTCACCGTCCCCCAAAATCAAA TTGTGGACGATTGAAAAGGAATCCACCATTACCTGTGAAGAGTCCAGGAAAGTGGAGGTGACGCTCGAAGAACCTGCTCC TGTCGTTGAAGAAAGCGAAGGCATATGCGAAACGTATATCATTCCCCCCCAGATTTTTGTAACGGCTTGCAAGGATGAAG TGCTCGACGAGTGGAGACTGCGCGTGCAGCAAGTTTCCGCCGGTTCCAGGATTCTCTTGCGCACGGGAGGATACAGGGAT GCCCTTAAAAATCCCCCTGTCACCGAAGAAGAAGCTATAGATGCTGTCAATGAAATGAACCGTTACCAGTCTCATAGACT CGGCGCATGGCATACTCAGGAGGCATCCCTCGCCCACGAGGAACACCACCGCCGAGAATTTAATGACGCCTTCCAATTCT ACTGGGACAATTTGAGAATACAGGATACGCTTGAAATGAAGCATGAATCCTGTGAAAAAGTTCCGAAAATGGAAGAGTTT CTGGAAAATATGCAGCCATTCGTTACCGAGTTGAGGAATATGTATTCTGACGCTGTCTATAACTATGTCTTGGTATTGCC GGATGATGCCAATGATCGTCCCTACTGTGCCGGACAAAAAGTTCTGAACGAGGCGACCCGGAAGATTATTGCCCAGGCAA AGACCAATGGATGGAGCAGGGTACCTGATGAAGTCACGGAACCGGGAACGATTGAACCGCCCTGTTTCCTTCCGCCCGTC AACGGCATGTATGCCCGCAGCGTGGCTGCTGCGGGGGAACAGGCTCCCTTGACCCTCTCCATTGCGGATACCTCCCGATT CAGGGAGGGCAGAATCACAGTCCGCTTCCGCAACGAAGGAAACGAGCCTGTCCGGATTCCGGACGAAATCAACGACGAAA CAGCCGATTATTTCTTCCTGACGGTGTTGAGGACGGAACGGGGGAACTTCCGCGTCCTGAACAGGAAAGTCGGGAAAATA ACCTTCAATCGTTCCTTGAACTACCGGGAACTGGCCCCCGGCCAGGAATACAGCGTCACGATTCCGGTATGCCTGGATGA AGTCGATCTGGAAGGCTGGAAACAATGTTCTTGTGAACTGGAAACGCGCTACTATAATCAGCAGGGTAAGGATTGTTTCC TGGGGAAGCTCCGGGCGACGGCCAAACTCGCGCTGTGA
Upstream 100 bases:
>100_bases CCTTCATCACGTCCGGGACGTGTTGTTGTTCTTCCTGGAATTCCTTATGTTCATTTGAGAACTAAATGGTTAGTTCTCAA ACAGGAAACAATTCAGAAAC
Downstream 100 bases:
>100_bases TGAAAAAAATCTTCCGGTATTTAATACTTCTGGCAAGCCTGTCCCTCCATGCCGCGGCGTGGGGGGACATGGCCGACAAC GGAGTGGAATGCTCCGTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 545; Mature: 545
Protein sequence:
>545_residues MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEEDGLYYFGVEADDTGSISIANE KLCEKDGTKPNGKLNLATGARYLKAGYYKVALSYTNNAYTPVSNNAAAFNVTMDREPIQEGKYEGNSTMKREFSPSPKIK LWTIEKESTITCEESRKVEVTLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRIQDTLEMKHESCEKVPKMEEF LENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQKVLNEATRKIIAQAKTNGWSRVPDEVTEPGTIEPPCFLPPV NGMYARSVAAAGEQAPLTLSIADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFLGKLRATAKLAL
Sequences:
>Translated_545_residues MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEEDGLYYFGVEADDTGSISIANE KLCEKDGTKPNGKLNLATGARYLKAGYYKVALSYTNNAYTPVSNNAAAFNVTMDREPIQEGKYEGNSTMKREFSPSPKIK LWTIEKESTITCEESRKVEVTLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRIQDTLEMKHESCEKVPKMEEF LENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQKVLNEATRKIIAQAKTNGWSRVPDEVTEPGTIEPPCFLPPV NGMYARSVAAAGEQAPLTLSIADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFLGKLRATAKLAL >Mature_545_residues MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEEDGLYYFGVEADDTGSISIANE KLCEKDGTKPNGKLNLATGARYLKAGYYKVALSYTNNAYTPVSNNAAAFNVTMDREPIQEGKYEGNSTMKREFSPSPKIK LWTIEKESTITCEESRKVEVTLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRIQDTLEMKHESCEKVPKMEEF LENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQKVLNEATRKIIAQAKTNGWSRVPDEVTEPGTIEPPCFLPPV NGMYARSVAAAGEQAPLTLSIADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFLGKLRATAKLAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61691; Mature: 61691
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEED CCCCCCCCCCCCCEEEECCCHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC GLYYFGVEADDTGSISIANEKLCEKDGTKPNGKLNLATGARYLKAGYYKVALSYTNNAYT CEEEEEEECCCCCCEEECCHHHHHHCCCCCCCEEEECCCCHHHHCCEEEEEEEECCCCCC PVSNNAAAFNVTMDREPIQEGKYEGNSTMKREFSPSPKIKLWTIEKESTITCEESRKVEV CCCCCCEEEEEEECCCCHHHCCCCCCCCEECCCCCCCCEEEEEECCCCEEEECCCCEEEE TLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD EECCCCCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRI HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE QDTLEMKHESCEKVPKMEEFLENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQK EHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHH VLNEATRKIIAQAKTNGWSRVPDEVTEPGTIEPPCFLPPVNGMYARSVAAAGEQAPLTLS HHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEE IADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI ECCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEE TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFLGKLRAT EEECCCCHHCCCCCCCEEEEEEEEEECCCCCCHHHCCEEEEEHCCCCCCCEEHHHHHHHH AKLAL EEECC >Mature Secondary Structure MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEED CCCCCCCCCCCCCEEEECCCHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC GLYYFGVEADDTGSISIANEKLCEKDGTKPNGKLNLATGARYLKAGYYKVALSYTNNAYT CEEEEEEECCCCCCEEECCHHHHHHCCCCCCCEEEECCCCHHHHCCEEEEEEEECCCCCC PVSNNAAAFNVTMDREPIQEGKYEGNSTMKREFSPSPKIKLWTIEKESTITCEESRKVEV CCCCCCEEEEEEECCCCHHHCCCCCCCCEECCCCCCCCEEEEEECCCCEEEECCCCEEEE TLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD EECCCCCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRI HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE QDTLEMKHESCEKVPKMEEFLENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQK EHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHH VLNEATRKIIAQAKTNGWSRVPDEVTEPGTIEPPCFLPPVNGMYARSVAAAGEQAPLTLS HHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEE IADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI ECCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEE TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFLGKLRAT EEECCCCHHCCCCCCCEEEEEEEEEECCCCCCHHHCCEEEEEHCCCCCCCEEHHHHHHHH AKLAL EEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA