Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187736265
Identifier: 187736265
GI number: 187736265
Start: 2166747
End: 2167733
Strand: Reverse
Name: 187736265
Synonym: Amuc_1778
Alternate gene names: NA
Gene position: 2167733-2166747 (Counterclockwise)
Preceding gene: 187736266
Following gene: 187736264
Centisome position: 81.37
GC content: 57.95
Gene sequence:
>987_bases ATGACGGAACACTTCCAATTTGCACAACCTGAATGGCTTTATGCCTTACCCTTCATCTTGTGCCTCATCATCCTCCGCCG CAGGCGCGGGGCGGAAGGCTCCATCACCTACCCCACCGTGCGCTTCATCGCTTCCCTGGCGCGCACTCCGCAATCCCTGG CAGGGAAAATAGGGGCCCTTTGCTTCGTTCTGGCGGCTGCCGCCATCGCCATCGCCCTGGCGCGCCCCCAGCACGTGGAA GATAAAACCTTCCGGACAGTCAACGGCATTGACATCATGATCGCCTTTGACCTTTCCTACTCCATGGAAACGCCGGACAT GGTTCTCAACCGAATGCCCATCAACCGGCTGGTAGCAGCCAAACACGTCATCACCCAATTTGTTGACAGCCGTCCGGACG ACCGCATCGGTATCGTGGGATTTGCCGGGAAAACAAAATCCTTCTGTCCGCTCACGCTGGACCACGCCCTGGTCAACAGC ATCATCCGGGATTTCCATCCGCGCATGATCCAGGCGGACGGCACGGCCATCGGCTCCGCCATTGCGGCGGCGGCCACCCG GCTGGACGACCGTAAGGAAACCAAATCAAAAATCATCATCCTGGTGACGGATGGTGCCTCCAACTCCGGCCAGATATCCC CGCTGGTGGCGGCGGAAAACGCGGCCAAGCTGGGTATCAAAATTTATACCATTGCCGTAGGCACGGAAGAAGGAACCCTG GCGAACGGTATGGTGGTGCAAAGTGAATTTGACGAACCAACCCTGCGGAAAATAGCCCAGCTCACGGGCGGAGAACACTT CCGGGCCACCAATATGGCCTCCTTCAATAAAGCGTTCACCTCCATCGGGAAGCTGGAAAAAAGCGAGGCCAAAGTGCAAA CCGTCCGCCACATTGAAGAATACTTCATGTACTTCCTTGTAACGGGAGCCGCGCTGGCGCTTCTGGGCCTCTCCCTGCAA GTGCTCAAACCGGCCCCCGCCCCGTAA
Upstream 100 bases:
>100_bases ACTCATCAATGATATAGAAGCGGATGCCCACCGGACGAAGGAAGAAACGGACCTTGTCGTCAAAAAATCTTCATCCCGCT TCAACCAACGCTAGCATACC
Downstream 100 bases:
>100_bases TACCGATCTTCACCCGTCATGACTTTCCTTTATCCCAACGTTCTGTACGCGCTCATTCTCCCGGTCCTGCTCGCAGCGGC GGCCTGGTGGCTGTGGCGCC
Product: von Willebrand factor type A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MTEHFQFAQPEWLYALPFILCLIILRRRRGAEGSITYPTVRFIASLARTPQSLAGKIGALCFVLAAAAIAIALARPQHVE DKTFRTVNGIDIMIAFDLSYSMETPDMVLNRMPINRLVAAKHVITQFVDSRPDDRIGIVGFAGKTKSFCPLTLDHALVNS IIRDFHPRMIQADGTAIGSAIAAAATRLDDRKETKSKIIILVTDGASNSGQISPLVAAENAAKLGIKIYTIAVGTEEGTL ANGMVVQSEFDEPTLRKIAQLTGGEHFRATNMASFNKAFTSIGKLEKSEAKVQTVRHIEEYFMYFLVTGAALALLGLSLQ VLKPAPAP
Sequences:
>Translated_328_residues MTEHFQFAQPEWLYALPFILCLIILRRRRGAEGSITYPTVRFIASLARTPQSLAGKIGALCFVLAAAAIAIALARPQHVE DKTFRTVNGIDIMIAFDLSYSMETPDMVLNRMPINRLVAAKHVITQFVDSRPDDRIGIVGFAGKTKSFCPLTLDHALVNS IIRDFHPRMIQADGTAIGSAIAAAATRLDDRKETKSKIIILVTDGASNSGQISPLVAAENAAKLGIKIYTIAVGTEEGTL ANGMVVQSEFDEPTLRKIAQLTGGEHFRATNMASFNKAFTSIGKLEKSEAKVQTVRHIEEYFMYFLVTGAALALLGLSLQ VLKPAPAP >Mature_327_residues TEHFQFAQPEWLYALPFILCLIILRRRRGAEGSITYPTVRFIASLARTPQSLAGKIGALCFVLAAAAIAIALARPQHVED KTFRTVNGIDIMIAFDLSYSMETPDMVLNRMPINRLVAAKHVITQFVDSRPDDRIGIVGFAGKTKSFCPLTLDHALVNSI IRDFHPRMIQADGTAIGSAIAAAATRLDDRKETKSKIIILVTDGASNSGQISPLVAAENAAKLGIKIYTIAVGTEEGTLA NGMVVQSEFDEPTLRKIAQLTGGEHFRATNMASFNKAFTSIGKLEKSEAKVQTVRHIEEYFMYFLVTGAALALLGLSLQV LKPAPAP
Specific function: Unknown
COG id: COG2304
COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002035 [H]
Pfam domain/function: PF00092 VWA [H]
EC number: NA
Molecular weight: Translated: 35658; Mature: 35527
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHFQFAQPEWLYALPFILCLIILRRRRGAEGSITYPTVRFIASLARTPQSLAGKIGAL CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH CFVLAAAAIAIALARPQHVEDKTFRTVNGIDIMIAFDLSYSMETPDMVLNRMPINRLVAA HHHHHHHHHHHHHCCCCCCCCCHHEEECCEEEEEEEECCCCCCCHHHHHHCCCHHHHHHH KHVITQFVDSRPDDRIGIVGFAGKTKSFCPLTLDHALVNSIIRDFHPRMIQADGTAIGSA HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHH IAAAATRLDDRKETKSKIIILVTDGASNSGQISPLVAAENAAKLGIKIYTIAVGTEEGTL HHHHHHHHCHHHHCCCEEEEEEECCCCCCCCCCEEEECCCCHHCCEEEEEEEEECCCCCC ANGMVVQSEFDEPTLRKIAQLTGGEHFRATNMASFNKAFTSIGKLEKSEAKVQTVRHIEE CCCEEEECCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFMYFLVTGAALALLGLSLQVLKPAPAP HHHHHHHHHHHHHHHHCHHHEECCCCCC >Mature Secondary Structure TEHFQFAQPEWLYALPFILCLIILRRRRGAEGSITYPTVRFIASLARTPQSLAGKIGAL CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH CFVLAAAAIAIALARPQHVEDKTFRTVNGIDIMIAFDLSYSMETPDMVLNRMPINRLVAA HHHHHHHHHHHHHCCCCCCCCCHHEEECCEEEEEEEECCCCCCCHHHHHHCCCHHHHHHH KHVITQFVDSRPDDRIGIVGFAGKTKSFCPLTLDHALVNSIIRDFHPRMIQADGTAIGSA HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHH IAAAATRLDDRKETKSKIIILVTDGASNSGQISPLVAAENAAKLGIKIYTIAVGTEEGTL HHHHHHHHCHHHHCCCEEEEEEECCCCCCCCCCEEEECCCCHHCCEEEEEEEEECCCCCC ANGMVVQSEFDEPTLRKIAQLTGGEHFRATNMASFNKAFTSIGKLEKSEAKVQTVRHIEE CCCEEEECCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFMYFLVTGAALALLGLSLQVLKPAPAP HHHHHHHHHHHHHHHHCHHHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9403685 [H]