Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736191
Identifier: 187736191
GI number: 187736191
Start: 2069373
End: 2071016
Strand: Reverse
Name: 187736191
Synonym: Amuc_1704
Alternate gene names: NA
Gene position: 2071016-2069373 (Counterclockwise)
Preceding gene: 187736194
Following gene: 187736190
Centisome position: 77.74
GC content: 57.48
Gene sequence:
>1644_bases ATGATGACCGACGAAACTCCTTCCACAGACCCCAAGCAGCAGATTCCGGACCTTTCCGGCTTGGCCGACTTTCAATTTGG TCCGGCCTGGGCGAGACCGGGAGCCCGTCAGGAACGGCCTGTATCCTACCCGGAACGCAGGTCCGGAGACAGGCAGGGAG GCGACCGCCGACCGCGGCGCGACAACCGTGAAGGCCGCCAGCCCCGGGGGGAACGTCGTGTTGACGGTCAAAGCGGCGAA AGAAGGTTTAACCGGGAAGACCGCACGCGCGGCTCCCTCCGCAACCGCCGCGATCAAACTCCCCGCTCCACCATGGAGGA ACCGACGGAAGGCCTGCGCGTGGAGCTGCGCCCCGTGGATTCCGGCCTGGCTGCCCTGCACCAGGAAGTACAGAAACACC GCCGCACCATTTCCCTGCTGGACCTTGCCAAGGTGGTCATGGGTTCCTACGACCGTTATGACCTGGTATTCATGAAGCAG GAAAACGGCCCGGATCTGTACCATTGCAAGCATGGCGACGGCGCCTGCTTTATTTCCCGACAGGAGGCCGTCAAACACCT CTGGCAGTCCACCTGGATGCCCAAATATTACGAATCCGTAGAACAGGAAGTGGAAGCTCCAAAAGGAGATTTCAAAGCCA TTGCCAAATGTTCCTTAAACAACGAGCTGATAGGTCCCGTTAATTGGCACGGCTACCAGTCCGCCCTGATGAACCTGCAT CGCACCAAATTTGCCAACATGACTTTTGAGGCTTTCCGTTCCAAGATTGTGACGGACAAGAGCGAAGAAGCTGTCCAGGC ATGGCAGGAAGCCGTTTCCAAACGCACCGCCTGGAAGCCCGTTCGGGAAGGAGCCTCCGAAGTGCTTCTGGAATCTCCCG CCGCGGTAGAACAGGATTTCGAATCCAACCACTTTGACGAGTGCTATGACGTTACGGACAAGGTGTTCGTCAACGGAGCC GTGAAAAAGAATCACCTCTCTCCCGGTCTGTGGGCGCACCTGATCCAATTATCCGGCACCACCCGCCGCCATCCCAGCAT GCTGATTCCCAACCTTTGCCACGGGTTAGCCCGGCATCATATGCCTATTTTCAAGTGGAAAGGCAACCATTACACCGGCC CGGCACGCCCCAAGGCCATGGAAGAAGGCACCGTCTTATCAGATTCCCTGATGTCCATTGCCACCTGGGCGGCCAATAAT CCCGGCAAAGGCGTCGATGCCATGCTTAAAGAGCTGGCCCCAATCCCGGAACAGGAAAAGGCCTCGGAAGAAGAAGTAGC CCAGGCCATGGAAAAACAGCAGAATTTGGTCCGTGATCTGCTCTGGCTGTCCGAACAGGGCTATATCCTGGTTTTCTCCA ATAACACTGTCAGCCGCCCAAGAACCGTCTCCGCCCAAGCTCCTTCTCCCAAGAAGGCTCCCAAGGAAAAACGGAAACCG GAAGAGAAGGGCCAGGACGCGCCGGCAACGGACTCCGCTACACCAGAAAAACAGAAGGCAGCCTCTTCTTCCGAGGCGGC GCCCGCCCGGGAGGAAGCATCTGAAGAAAACAGCGTGGTTACGGAAACTGAAGAATTCCCCTCCGTTCCGGCGGAAGAAC TCCCTGAAAATAATATTCCGGAGGAGGTTTCCGCAAAAGCCTGA
Upstream 100 bases:
>100_bases TTCCAGATGCCTTTCATGACATTTTGAACAATTTTCGGTCTGTTTGCACGTAAAATGATTGCCATCCACCTCATTTAGTT GCTATTGAAACAACCCGTAC
Downstream 100 bases:
>100_bases CGCCTTCCCTTCCCCCCCTTCCCGTCATACAGTCCGCAGGATTATCTTGATCCTGCGGACTTTGTTTTGTAGAAGTGGGG AAAATCAACAGGATTTTACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 547; Mature: 547
Protein sequence:
>547_residues MMTDETPSTDPKQQIPDLSGLADFQFGPAWARPGARQERPVSYPERRSGDRQGGDRRPRRDNREGRQPRGERRVDGQSGE RRFNREDRTRGSLRNRRDQTPRSTMEEPTEGLRVELRPVDSGLAALHQEVQKHRRTISLLDLAKVVMGSYDRYDLVFMKQ ENGPDLYHCKHGDGACFISRQEAVKHLWQSTWMPKYYESVEQEVEAPKGDFKAIAKCSLNNELIGPVNWHGYQSALMNLH RTKFANMTFEAFRSKIVTDKSEEAVQAWQEAVSKRTAWKPVREGASEVLLESPAAVEQDFESNHFDECYDVTDKVFVNGA VKKNHLSPGLWAHLIQLSGTTRRHPSMLIPNLCHGLARHHMPIFKWKGNHYTGPARPKAMEEGTVLSDSLMSIATWAANN PGKGVDAMLKELAPIPEQEKASEEEVAQAMEKQQNLVRDLLWLSEQGYILVFSNNTVSRPRTVSAQAPSPKKAPKEKRKP EEKGQDAPATDSATPEKQKAASSSEAAPAREEASEENSVVTETEEFPSVPAEELPENNIPEEVSAKA
Sequences:
>Translated_547_residues MMTDETPSTDPKQQIPDLSGLADFQFGPAWARPGARQERPVSYPERRSGDRQGGDRRPRRDNREGRQPRGERRVDGQSGE RRFNREDRTRGSLRNRRDQTPRSTMEEPTEGLRVELRPVDSGLAALHQEVQKHRRTISLLDLAKVVMGSYDRYDLVFMKQ ENGPDLYHCKHGDGACFISRQEAVKHLWQSTWMPKYYESVEQEVEAPKGDFKAIAKCSLNNELIGPVNWHGYQSALMNLH RTKFANMTFEAFRSKIVTDKSEEAVQAWQEAVSKRTAWKPVREGASEVLLESPAAVEQDFESNHFDECYDVTDKVFVNGA VKKNHLSPGLWAHLIQLSGTTRRHPSMLIPNLCHGLARHHMPIFKWKGNHYTGPARPKAMEEGTVLSDSLMSIATWAANN PGKGVDAMLKELAPIPEQEKASEEEVAQAMEKQQNLVRDLLWLSEQGYILVFSNNTVSRPRTVSAQAPSPKKAPKEKRKP EEKGQDAPATDSATPEKQKAASSSEAAPAREEASEENSVVTETEEFPSVPAEELPENNIPEEVSAKA >Mature_547_residues MMTDETPSTDPKQQIPDLSGLADFQFGPAWARPGARQERPVSYPERRSGDRQGGDRRPRRDNREGRQPRGERRVDGQSGE RRFNREDRTRGSLRNRRDQTPRSTMEEPTEGLRVELRPVDSGLAALHQEVQKHRRTISLLDLAKVVMGSYDRYDLVFMKQ ENGPDLYHCKHGDGACFISRQEAVKHLWQSTWMPKYYESVEQEVEAPKGDFKAIAKCSLNNELIGPVNWHGYQSALMNLH RTKFANMTFEAFRSKIVTDKSEEAVQAWQEAVSKRTAWKPVREGASEVLLESPAAVEQDFESNHFDECYDVTDKVFVNGA VKKNHLSPGLWAHLIQLSGTTRRHPSMLIPNLCHGLARHHMPIFKWKGNHYTGPARPKAMEEGTVLSDSLMSIATWAANN PGKGVDAMLKELAPIPEQEKASEEEVAQAMEKQQNLVRDLLWLSEQGYILVFSNNTVSRPRTVSAQAPSPKKAPKEKRKP EEKGQDAPATDSATPEKQKAASSSEAAPAREEASEENSVVTETEEFPSVPAEELPENNIPEEVSAKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61592; Mature: 61592
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTDETPSTDPKQQIPDLSGLADFQFGPAWARPGARQERPVSYPERRSGDRQGGDRRPRR CCCCCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC DNREGRQPRGERRVDGQSGERRFNREDRTRGSLRNRRDQTPRSTMEEPTEGLRVELRPVD CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECC SGLAALHQEVQKHRRTISLLDLAKVVMGSYDRYDLVFMKQENGPDLYHCKHGDGACFISR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEH QEAVKHLWQSTWMPKYYESVEQEVEAPKGDFKAIAKCSLNNELIGPVNWHGYQSALMNLH HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCCCCHHHHHHHHHH RTKFANMTFEAFRSKIVTDKSEEAVQAWQEAVSKRTAWKPVREGASEVLLESPAAVEQDF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHH ESNHFDECYDVTDKVFVNGAVKKNHLSPGLWAHLIQLSGTTRRHPSMLIPNLCHGLARHH CCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC MPIFKWKGNHYTGPARPKAMEEGTVLSDSLMSIATWAANNPGKGVDAMLKELAPIPEQEK CCEEEECCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHC ASEEEVAQAMEKQQNLVRDLLWLSEQGYILVFSNNTVSRPRTVSAQAPSPKKAPKEKRKP CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCCCCCCCHHHCCC EEKGQDAPATDSATPEKQKAASSSEAAPAREEASEENSVVTETEEFPSVPAEELPENNIP HHHCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHCCCCEEECHHHHCCCCHHHCCCCCCC EEVSAKA CHHCCCC >Mature Secondary Structure MMTDETPSTDPKQQIPDLSGLADFQFGPAWARPGARQERPVSYPERRSGDRQGGDRRPRR CCCCCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC DNREGRQPRGERRVDGQSGERRFNREDRTRGSLRNRRDQTPRSTMEEPTEGLRVELRPVD CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECC SGLAALHQEVQKHRRTISLLDLAKVVMGSYDRYDLVFMKQENGPDLYHCKHGDGACFISR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEH QEAVKHLWQSTWMPKYYESVEQEVEAPKGDFKAIAKCSLNNELIGPVNWHGYQSALMNLH HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCCCCHHHHHHHHHH RTKFANMTFEAFRSKIVTDKSEEAVQAWQEAVSKRTAWKPVREGASEVLLESPAAVEQDF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHH ESNHFDECYDVTDKVFVNGAVKKNHLSPGLWAHLIQLSGTTRRHPSMLIPNLCHGLARHH CCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC MPIFKWKGNHYTGPARPKAMEEGTVLSDSLMSIATWAANNPGKGVDAMLKELAPIPEQEK CCEEEECCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHC ASEEEVAQAMEKQQNLVRDLLWLSEQGYILVFSNNTVSRPRTVSAQAPSPKKAPKEKRKP CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCCCCCCCHHHCCC EEKGQDAPATDSATPEKQKAASSSEAAPAREEASEENSVVTETEEFPSVPAEELPENNIP HHHCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHCCCCEEECHHHHCCCCHHHCCCCCCC EEVSAKA CHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA