Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is ybjI [H]

Identifier: 187736039

GI number: 187736039

Start: 1862642

End: 1863481

Strand: Direct

Name: ybjI [H]

Synonym: Amuc_1549

Alternate gene names: 187736039

Gene position: 1862642-1863481 (Clockwise)

Preceding gene: 187736037

Following gene: 187736040

Centisome position: 69.92

GC content: 54.05

Gene sequence:

>840_bases
ATGGATTCCGTCAAACTTATTGCGTCCGATATGGATGGGACGCTGCTTAATGGAAAAGGTGAATTGGACCCTGCGTTTTT
TCCCTTGTTTAGGGAACTTGAGCTTCGCGGCATTCGTTTTGCGGCAGCAAGCGGCCGCCAGTATGACGGATTGCTCCGGA
CCTTTGCCCCCGTGGCGGACCGGATGCTGTTTATTGCCGAGAATGGCGCTTATGCGGCGGCGGGTAGAAAAGAATGGCTG
CTTCTGGACATGGATCATGAAACGGTAGCCGGTTTGATTGCCGGGATCAGGTGCATTGAAGGAACCTGCATCGTCCTCGC
AGGGCGGGATTCCGCATATATTGAGGACAAACAGCCGGAATTCGTCCGGGAGGCCCGCAAATATTACACACGCTGTCAAG
AAGTGGGGGACCTGCTGGACGTGCGGGGAGACAAACTTTTGAAAATAGCAGTATATGACTTCCTGGGAGCCGGGGAAAAC
AGTTATCCCCGGCTGAAGCATTTGGAACATGGCTTCCAGGTGGCTGTCTCCGGAGAGAAATGGATGGATATCAGCCGGAA
AGGGGCCAATAAGGGGGCCGCTCTGGAATTGATTCAGAGGAAACTGGGAATTTCTTCGGAGGAAACGATGGTTTTCGGGG
ATCAGATGAATGACGCTCCAATGATGCGGCAGGCGCGTTTCAGTTATGCCATGGCGAATGCCGTGCCGGAAATCCGTTCC
ATGGCCGCATTTGAGGCGCCGTCCAATGAGGAAAACGGAGTGATGCAGGTGCTTGGAAAGATGTTGGACGCCCATTCTCC
GCAGGGAAGGGCCGGGAATTGCAGGAAACCCCGTCTCTAA

Upstream 100 bases:

>100_bases
TGCTGCTGGCCTCCTGGTCTTTCCTTTCGCTGTCCGCTCCATGCTGTCTGAAGCCGCTCTTGCCCTGGAAGTAAGGATAA
ACGATGATTCTGGCAGCGTT

Downstream 100 bases:

>100_bases
TTGCCGGGTAATGGAATAAAATCAGGGTTATGTTGATGTTATTGTCAGATTTTTTTAATATGCTGGCGATGGCCGTGTTC
GCTTGCATTGGCGGTGTTTT

Product: Cof-like hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVADRMLFIAENGAYAAAGRKEWL
LLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPEFVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGEN
SYPRLKHLEHGFQVAVSGEKWMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS
MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL

Sequences:

>Translated_279_residues
MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVADRMLFIAENGAYAAAGRKEWL
LLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPEFVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGEN
SYPRLKHLEHGFQVAVSGEKWMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS
MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL
>Mature_279_residues
MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVADRMLFIAENGAYAAAGRKEWL
LLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPEFVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGEN
SYPRLKHLEHGFQVAVSGEKWMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS
MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL

Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates FMN and beta-glucose 1-phosphate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI87081790, Length=272, Percent_Identity=31.6176470588235, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787043, Length=272, Percent_Identity=30.8823529411765, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI2367265, Length=270, Percent_Identity=25.5555555555556, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 30889; Mature: 30889

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS01228 COF_1 ; PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVAD
CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
RMLFIAENGAYAAAGRKEWLLLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPE
EEEEEECCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCHH
FVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGENSYPRLKHLEHGFQVAVSGEK
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCHHHHHCCCEEEEECCCH
WMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS
HHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL
HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVAD
CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
RMLFIAENGAYAAAGRKEWLLLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPE
EEEEEECCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCHH
FVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGENSYPRLKHLEHGFQVAVSGEK
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCHHHHHCCCEEEEECCCH
WMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS
HHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL
HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 10493123 [H]