Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ybjI [H]
Identifier: 187736039
GI number: 187736039
Start: 1862642
End: 1863481
Strand: Direct
Name: ybjI [H]
Synonym: Amuc_1549
Alternate gene names: 187736039
Gene position: 1862642-1863481 (Clockwise)
Preceding gene: 187736037
Following gene: 187736040
Centisome position: 69.92
GC content: 54.05
Gene sequence:
>840_bases ATGGATTCCGTCAAACTTATTGCGTCCGATATGGATGGGACGCTGCTTAATGGAAAAGGTGAATTGGACCCTGCGTTTTT TCCCTTGTTTAGGGAACTTGAGCTTCGCGGCATTCGTTTTGCGGCAGCAAGCGGCCGCCAGTATGACGGATTGCTCCGGA CCTTTGCCCCCGTGGCGGACCGGATGCTGTTTATTGCCGAGAATGGCGCTTATGCGGCGGCGGGTAGAAAAGAATGGCTG CTTCTGGACATGGATCATGAAACGGTAGCCGGTTTGATTGCCGGGATCAGGTGCATTGAAGGAACCTGCATCGTCCTCGC AGGGCGGGATTCCGCATATATTGAGGACAAACAGCCGGAATTCGTCCGGGAGGCCCGCAAATATTACACACGCTGTCAAG AAGTGGGGGACCTGCTGGACGTGCGGGGAGACAAACTTTTGAAAATAGCAGTATATGACTTCCTGGGAGCCGGGGAAAAC AGTTATCCCCGGCTGAAGCATTTGGAACATGGCTTCCAGGTGGCTGTCTCCGGAGAGAAATGGATGGATATCAGCCGGAA AGGGGCCAATAAGGGGGCCGCTCTGGAATTGATTCAGAGGAAACTGGGAATTTCTTCGGAGGAAACGATGGTTTTCGGGG ATCAGATGAATGACGCTCCAATGATGCGGCAGGCGCGTTTCAGTTATGCCATGGCGAATGCCGTGCCGGAAATCCGTTCC ATGGCCGCATTTGAGGCGCCGTCCAATGAGGAAAACGGAGTGATGCAGGTGCTTGGAAAGATGTTGGACGCCCATTCTCC GCAGGGAAGGGCCGGGAATTGCAGGAAACCCCGTCTCTAA
Upstream 100 bases:
>100_bases TGCTGCTGGCCTCCTGGTCTTTCCTTTCGCTGTCCGCTCCATGCTGTCTGAAGCCGCTCTTGCCCTGGAAGTAAGGATAA ACGATGATTCTGGCAGCGTT
Downstream 100 bases:
>100_bases TTGCCGGGTAATGGAATAAAATCAGGGTTATGTTGATGTTATTGTCAGATTTTTTTAATATGCTGGCGATGGCCGTGTTC GCTTGCATTGGCGGTGTTTT
Product: Cof-like hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVADRMLFIAENGAYAAAGRKEWL LLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPEFVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGEN SYPRLKHLEHGFQVAVSGEKWMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL
Sequences:
>Translated_279_residues MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVADRMLFIAENGAYAAAGRKEWL LLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPEFVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGEN SYPRLKHLEHGFQVAVSGEKWMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL >Mature_279_residues MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVADRMLFIAENGAYAAAGRKEWL LLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPEFVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGEN SYPRLKHLEHGFQVAVSGEKWMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates FMN and beta-glucose 1-phosphate [H]
COG id: COG0561
COG function: function code R; Predicted hydrolases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]
Homologues:
Organism=Escherichia coli, GI87081790, Length=272, Percent_Identity=31.6176470588235, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1787043, Length=272, Percent_Identity=30.8823529411765, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI2367265, Length=270, Percent_Identity=25.5555555555556, Blast_Score=79, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006379 - InterPro: IPR000150 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 30889; Mature: 30889
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS01228 COF_1 ; PS01229 COF_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVAD CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH RMLFIAENGAYAAAGRKEWLLLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPE EEEEEECCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCHH FVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGENSYPRLKHLEHGFQVAVSGEK HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCHHHHHCCCEEEEECCCH WMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS HHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MDSVKLIASDMDGTLLNGKGELDPAFFPLFRELELRGIRFAAASGRQYDGLLRTFAPVAD CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH RMLFIAENGAYAAAGRKEWLLLDMDHETVAGLIAGIRCIEGTCIVLAGRDSAYIEDKQPE EEEEEECCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCHH FVREARKYYTRCQEVGDLLDVRGDKLLKIAVYDFLGAGENSYPRLKHLEHGFQVAVSGEK HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCHHHHHCCCEEEEECCCH WMDISRKGANKGAALELIQRKLGISSEETMVFGDQMNDAPMMRQARFSYAMANAVPEIRS HHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH MAAFEAPSNEENGVMQVLGKMLDAHSPQGRAGNCRKPRL HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 10493123 [H]