Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736016
Identifier: 187736016
GI number: 187736016
Start: 1826050
End: 1826790
Strand: Direct
Name: 187736016
Synonym: Amuc_1526
Alternate gene names: NA
Gene position: 1826050-1826790 (Clockwise)
Preceding gene: 187736015
Following gene: 187736017
Centisome position: 68.54
GC content: 61.0
Gene sequence:
>741_bases ATGTTGGGTTTCACAAATATCGTCGGCAATTTATCCCCTCTGCCGGAATTAGTGCTGTGGCGCGATCCTGTCGCCAGAAG CGGGGAGGAAGCCATGGCCGTGGACGAAGCTCTGCTGGAATGGGGCAGGAAGCCTGTGCTGAGGGCGTACCGCTGGGCGG AACCGACCGTGACTTACGGTTATTTTGATGAGGAGGCCACGGCGCGCGCCATTTTCCCGGGTGAGGAGCTTCATTTTGTC CGCCGCTGGACAGGGGGGGGGATTGTAGACCATCGGCAGGATATTCCCTTTACGCTGGCCATGCACCGCAAGGGAGAAAA AGAGCGTCCTTCCAGCGCGGTTTTGTACCGTTGGATTCATGGGGCGCTGGCCCGCGTCCTGAGGGATTGCGACGTGGAGT GCGTGATGCTGGACGGGGATGCCCCGGACGGAGGGCGGGCCTGTTTTTCCAGCCCCGTAACGAGTGATCTTGTCCTTCCC GGCGGGGAAAAACTGGCTGGCGGCGGCCAGAGAAGAGTCCGCGGAGGCGTTCTTCACCAGGGGAGCATCCAGAATTGTCT TCTCCCTTCCGGATGGGATGAATTGCTGGCCGCCCGCCTGGCGGAAAAGCATTCCCTGTGCGTGGACGCGGAATTGTTCC CCGGCATGAATGCCCGCGTGGAGGAACTGCTGGCTTCCAAATACCGTACGGAAGCATGGCGTTCCGGCGTACGGCATGGG CGTCCGTCTCAGCCACGGTAA
Upstream 100 bases:
>100_bases GAACCGTTAGGCCTGTATCCGGGAAACCGGGGAGGGCGGAACGTCCGCTGTTGCTTTTTGCCTGGAGCGTTCCTGCCATT AATTGTTCTGTAGTTGCCAT
Downstream 100 bases:
>100_bases TTCCCCCCCCTTTTTTCTTTCCGATGAATTATCTTCCAGATCCCGGCCGCTATAGCCACGCAGCCTACCGCCGCTGCGGG CGCAGCGGGCTGCTGCTTCC
Product: Lipoate-protein ligase A-like protein
Products: NA
Alternate protein names: Lipoate-Protein Ligase A-Like Protein; Biotin/Lipoate A/B Protein Ligase
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MLGFTNIVGNLSPLPELVLWRDPVARSGEEAMAVDEALLEWGRKPVLRAYRWAEPTVTYGYFDEEATARAIFPGEELHFV RRWTGGGIVDHRQDIPFTLAMHRKGEKERPSSAVLYRWIHGALARVLRDCDVECVMLDGDAPDGGRACFSSPVTSDLVLP GGEKLAGGGQRRVRGGVLHQGSIQNCLLPSGWDELLAARLAEKHSLCVDAELFPGMNARVEELLASKYRTEAWRSGVRHG RPSQPR
Sequences:
>Translated_246_residues MLGFTNIVGNLSPLPELVLWRDPVARSGEEAMAVDEALLEWGRKPVLRAYRWAEPTVTYGYFDEEATARAIFPGEELHFV RRWTGGGIVDHRQDIPFTLAMHRKGEKERPSSAVLYRWIHGALARVLRDCDVECVMLDGDAPDGGRACFSSPVTSDLVLP GGEKLAGGGQRRVRGGVLHQGSIQNCLLPSGWDELLAARLAEKHSLCVDAELFPGMNARVEELLASKYRTEAWRSGVRHG RPSQPR >Mature_246_residues MLGFTNIVGNLSPLPELVLWRDPVARSGEEAMAVDEALLEWGRKPVLRAYRWAEPTVTYGYFDEEATARAIFPGEELHFV RRWTGGGIVDHRQDIPFTLAMHRKGEKERPSSAVLYRWIHGALARVLRDCDVECVMLDGDAPDGGRACFSSPVTSDLVLP GGEKLAGGGQRRVRGGVLHQGSIQNCLLPSGWDELLAARLAEKHSLCVDAELFPGMNARVEELLASKYRTEAWRSGVRHG RPSQPR
Specific function: Unknown
COG id: COG0095
COG function: function code H; Lipoate-protein ligase A
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27282; Mature: 27282
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGFTNIVGNLSPLPELVLWRDPVARSGEEAMAVDEALLEWGRKPVLRAYRWAEPTVTYG CCCCHHHHCCCCCCCHHHHCCCCHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEE YFDEEATARAIFPGEELHFVRRWTGGGIVDHRQDIPFTLAMHRKGEKERPSSAVLYRWIH EECCCCCEEEECCCHHHHHEEHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH GALARVLRDCDVECVMLDGDAPDGGRACFSSPVTSDLVLPGGEKLAGGGQRRVRGGVLHQ HHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCHHHHCCCCCC GSIQNCLLPSGWDELLAARLAEKHSLCVDAELFPGMNARVEELLASKYRTEAWRSGVRHG CCCCCCCCCCCHHHHHHHHHHHHHCEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC RPSQPR CCCCCC >Mature Secondary Structure MLGFTNIVGNLSPLPELVLWRDPVARSGEEAMAVDEALLEWGRKPVLRAYRWAEPTVTYG CCCCHHHHCCCCCCCHHHHCCCCHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEE YFDEEATARAIFPGEELHFVRRWTGGGIVDHRQDIPFTLAMHRKGEKERPSSAVLYRWIH EECCCCCEEEECCCHHHHHEEHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH GALARVLRDCDVECVMLDGDAPDGGRACFSSPVTSDLVLPGGEKLAGGGQRRVRGGVLHQ HHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCHHHHCCCCCC GSIQNCLLPSGWDELLAARLAEKHSLCVDAELFPGMNARVEELLASKYRTEAWRSGVRHG CCCCCCCCCCCHHHHHHHHHHHHHCEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC RPSQPR CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA