Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736005
Identifier: 187736005
GI number: 187736005
Start: 1808657
End: 1809907
Strand: Direct
Name: 187736005
Synonym: Amuc_1515
Alternate gene names: NA
Gene position: 1808657-1809907 (Clockwise)
Preceding gene: 187736004
Following gene: 187736008
Centisome position: 67.89
GC content: 58.43
Gene sequence:
>1251_bases GTGAAATGGCTGAATGACTGGCTGGGCTTTTTCAAGCCCCTTCAGGTGCGGAACCTGCAAATATTCTGGTCAGGGCAGGC TTCGGCCCTGATTGGAATGTGGTTGCAGGTGACGGCCATGGGTATTCTTGTGTACGATATTTCCGGAGGCTCCGCCACGG CAGTGGGGGTGTTGGCTGCCTTGAACGCTCTTCCTTTCTTTCTGGGCGGCATGCTGCTTGCCGGGCTGGGGGACCGTTTT GACCGGAGGAAACTCCTCATAGCCGTGCAGTGCGTCCAGTGGCTGGTGGCTGTAGCCCTGTTTCTGCTGACTGTGCTGGA TATGCTCCAGCTGTGGCACTTATACGCCGCCGGGCTGGTGATGGGCGTCAATCAGACGGTGGGTTTTCCCACACAGCAGG CTTTTGTGGGAGACCTGATACCGCGCCGGCAATTACAGGAGGCCGTGGGCATGTATTCTCTGGTATTTAATACGTGCCGG GCTATAGGGCCGGCGCTTGCCGGCTACATTATTGCGGAATGGGGCGCCGGAACCGCCTTTGGCGGCAATGTGGCGGCAAG CCTTCCGCTGGTTGGCTGCCTGGTTGCCTTAAAGGGACGCGTTGCGGATACCTCCGCTCCCAGAAAACAGCGCGGCGCAG GAAGGAAAGCATCCGGCCTCAAGGCGGTGCTTGCCACGCGCAGCCTGCTTTTCATCATGATCAGCGCTCTGATTCAGAAT ATCTGCGGGCAATCTCTCTATCAGATTGTTCCGGCATTGATGCACGGAAATCCCAGGAATACCGGCCTCATTCTGGGTGC GGTCGGAGCCGGAGCCATGGTGAGCATCCTCTTTGTCCTGCCGTTTGCACGCAAAAGCGACAGGGTGGGAGCCAAGCTTT CCTCAGGCACCCTGTGGATGGGATGCGCACTGTGCGTGGCAGGCGCCATCCCGGTGGTGGAAGTGCAGGCCCTCTGTTTC TTTTTTGCCGGTTTGGCCACTTCTTCCCTCTTTGTTACTTCTTCATCCGCCGTGCAGCTTCTGTCGCCCCCGGAACGCAA GTCGGCCATTCTGGGGCTGTTCAGCATTGTCACCATCGGTGTGCAGCCGCTGGCGGCCATGGGGTGGGGAGCTGTGGTGG ATGCCTGGGGTGTCCAGATGACGATTGTCGTGGCGGGGGGGCTGGAAGCCTTGTTTTCCATTTGGATGCTGGGCGTTCCA TTTTGGCGTCATTTCAAATTTTCTCCGGATGATTGTCCGGAGACGACATAG
Upstream 100 bases:
>100_bases ACCGCAGAGGAATAAGAAGGTTCTGGAACAGGGGGGGGAGGAGGCGTTGCCGCACTCGCTTCTGGACGGTTCCGCCGGCT GGGGCTAGGATGGCGGAGCT
Downstream 100 bases:
>100_bases CGCCTTCCCTTCCATTTGCGGCAGGGGAAGGCTGTCGGTCCTCATGCTGCGGGGAAAAGGGGTGCATGTAGGGTTTCCCC CCCGCGGATAATTCCGGGAT
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Integral Membrane Efflux Protein; Transmembrane Efflux Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; Multidrug ABC Transporter; MFS Permease; MFS Family Transporter; Permeases Of Facilitator Superfamily; Permease; Mfs Transporter; Transporter Facilitator Family; Arabinose Efflux Permease Family Protein; Drug Resistance Efflux Protein; MFS Family Transporter Protein; Facilitator Superfamily; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Facilitator MFS1 Protein; ABC Transporter Permease Protein; MFS Transporter; MFS Family Membrane Efflux Protein; Macrolide-Efflux Protein; Facilitator Superfamily Multidrug Efflux Transporter; Permease Of Facilitator Superfamily; Membrane Efflux Protein MFS; Transporter Facilitator Family Protein; Transport Transmembrane Protein; MFS Superfamily Transporter; Permeases Of Facilitator Superfamily Protein
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MKWLNDWLGFFKPLQVRNLQIFWSGQASALIGMWLQVTAMGILVYDISGGSATAVGVLAALNALPFFLGGMLLAGLGDRF DRRKLLIAVQCVQWLVAVALFLLTVLDMLQLWHLYAAGLVMGVNQTVGFPTQQAFVGDLIPRRQLQEAVGMYSLVFNTCR AIGPALAGYIIAEWGAGTAFGGNVAASLPLVGCLVALKGRVADTSAPRKQRGAGRKASGLKAVLATRSLLFIMISALIQN ICGQSLYQIVPALMHGNPRNTGLILGAVGAGAMVSILFVLPFARKSDRVGAKLSSGTLWMGCALCVAGAIPVVEVQALCF FFAGLATSSLFVTSSSAVQLLSPPERKSAILGLFSIVTIGVQPLAAMGWGAVVDAWGVQMTIVVAGGLEALFSIWMLGVP FWRHFKFSPDDCPETT
Sequences:
>Translated_416_residues MKWLNDWLGFFKPLQVRNLQIFWSGQASALIGMWLQVTAMGILVYDISGGSATAVGVLAALNALPFFLGGMLLAGLGDRF DRRKLLIAVQCVQWLVAVALFLLTVLDMLQLWHLYAAGLVMGVNQTVGFPTQQAFVGDLIPRRQLQEAVGMYSLVFNTCR AIGPALAGYIIAEWGAGTAFGGNVAASLPLVGCLVALKGRVADTSAPRKQRGAGRKASGLKAVLATRSLLFIMISALIQN ICGQSLYQIVPALMHGNPRNTGLILGAVGAGAMVSILFVLPFARKSDRVGAKLSSGTLWMGCALCVAGAIPVVEVQALCF FFAGLATSSLFVTSSSAVQLLSPPERKSAILGLFSIVTIGVQPLAAMGWGAVVDAWGVQMTIVVAGGLEALFSIWMLGVP FWRHFKFSPDDCPETT >Mature_416_residues MKWLNDWLGFFKPLQVRNLQIFWSGQASALIGMWLQVTAMGILVYDISGGSATAVGVLAALNALPFFLGGMLLAGLGDRF DRRKLLIAVQCVQWLVAVALFLLTVLDMLQLWHLYAAGLVMGVNQTVGFPTQQAFVGDLIPRRQLQEAVGMYSLVFNTCR AIGPALAGYIIAEWGAGTAFGGNVAASLPLVGCLVALKGRVADTSAPRKQRGAGRKASGLKAVLATRSLLFIMISALIQN ICGQSLYQIVPALMHGNPRNTGLILGAVGAGAMVSILFVLPFARKSDRVGAKLSSGTLWMGCALCVAGAIPVVEVQALCF FFAGLATSSLFVTSSSAVQLLSPPERKSAILGLFSIVTIGVQPLAAMGWGAVVDAWGVQMTIVVAGGLEALFSIWMLGVP FWRHFKFSPDDCPETT
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44108; Mature: 44108
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: PS00213 LIPOCALIN ; PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWLNDWLGFFKPLQVRNLQIFWSGQASALIGMWLQVTAMGILVYDISGGSATAVGVLAA CCHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHH LNALPFFLGGMLLAGLGDRFDRRKLLIAVQCVQWLVAVALFLLTVLDMLQLWHLYAAGLV HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MGVNQTVGFPTQQAFVGDLIPRRQLQEAVGMYSLVFNTCRAIGPALAGYIIAEWGAGTAF HCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC GGNVAASLPLVGCLVALKGRVADTSAPRKQRGAGRKASGLKAVLATRSLLFIMISALIQN CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ICGQSLYQIVPALMHGNPRNTGLILGAVGAGAMVSILFVLPFARKSDRVGAKLSSGTLWM HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCEECCCCHHH GCALCVAGAIPVVEVQALCFFFAGLATSSLFVTSSSAVQLLSPPERKSAILGLFSIVTIG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCCHHHHHHHHHHHHHHHH VQPLAAMGWGAVVDAWGVQMTIVVAGGLEALFSIWMLGVPFWRHFKFSPDDCPETT HHHHHHHCCHHHHHHCCCEEEEEEECCHHHHHHHHHHHCHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKWLNDWLGFFKPLQVRNLQIFWSGQASALIGMWLQVTAMGILVYDISGGSATAVGVLAA CCHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHH LNALPFFLGGMLLAGLGDRFDRRKLLIAVQCVQWLVAVALFLLTVLDMLQLWHLYAAGLV HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MGVNQTVGFPTQQAFVGDLIPRRQLQEAVGMYSLVFNTCRAIGPALAGYIIAEWGAGTAF HCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC GGNVAASLPLVGCLVALKGRVADTSAPRKQRGAGRKASGLKAVLATRSLLFIMISALIQN CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ICGQSLYQIVPALMHGNPRNTGLILGAVGAGAMVSILFVLPFARKSDRVGAKLSSGTLWM HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCEECCCCHHH GCALCVAGAIPVVEVQALCFFFAGLATSSLFVTSSSAVQLLSPPERKSAILGLFSIVTIG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCCHHHHHHHHHHHHHHHH VQPLAAMGWGAVVDAWGVQMTIVVAGGLEALFSIWMLGVPFWRHFKFSPDDCPETT HHHHHHHCCHHHHHHCCCEEEEEEECCHHHHHHHHHHHCHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA