Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is yfbS [C]

Identifier: 187735981

GI number: 187735981

Start: 1780160

End: 1782034

Strand: Reverse

Name: yfbS [C]

Synonym: Amuc_1490

Alternate gene names: 187735981

Gene position: 1782034-1780160 (Counterclockwise)

Preceding gene: 187735983

Following gene: 187735977

Centisome position: 66.89

GC content: 56.91

Gene sequence:

>1875_bases
ATGCTTCCTCTTCTCAACATCAACTCCGCCTCCGTCATAGGCTGGCTGGAATCAGCGGCCGCCCAGCAATGGATTGTAGG
CATTCTGCTGGTCCTGTTATTCATCAGCTTCATCAAGGAATGGATGCCCGTGGAAATCACAGCCCTGACAGGCACCGCCG
TCCTCATGCTCACGGGAATTCTGAGCACGCGTGATGTGCTGTCCAGCTTTGCCAACAGCGGACCGCTGACAGTGGTGTGC
ATGTTCATTCTGAGTGCTTCCCTGGAAAGAACGGGATTAATAGGAGACCTTTCCAAACTGTTCAACAAGGTAGCCAAGGG
GAGGGAACTGACCGCCCTGCTGGTCATTACACTGGGAGCGTTCATGGTTTCCCCCTTCGTCAACAACACCCCGGTGGTCG
TCATCCTGATGCCCATCGTGCTGGCCTTCTGCAGGGATCATAACATCGCGGCCTCCAAGCTGCTCATCCCCCTCTCCTAC
GCCACCATTCTGGGAGGCACCTGCTCCGTGGTCGGAACATCCACCAACGTAGTTGTGCTCGGCCAGGTGCAGAAACTGGG
TTATGACGGCATCCAGATGTTCACGGTAACGCCCATGGGCCTGATTTATGCGGCGGCGGGCCTGCTCTACCTCTGGACAT
TAGGCCGCAAATGGCTTCCATCCCGCCCCACTTTGTCCACCATGCTTCCGGGCGGCATCCAGCGCGATTTCCTGCTCCAG
GTCAGAATTCCCGCGGATTCCCCCCACATCGGCACCACTCCCATCAACCTGATGCAAACCGAGTTGCTGGGCACCAAAAT
CGTGGAAGTTCGCCGCAGGGGATTCTCCATGCAGGAAGAGCTGCAGCACATCAACCTGGAAGAAGGAGACCGCATTCTTT
TCCTGTGCAACGCCAGAAAAGTCAACCAGGTGAGGGAAGCCAAAGGCGTGGACCTGGGCTGGGATGACAGCCGCGGGCTG
GAAACGCTGGAGCAGCGCGATGTGCAAATCGTGGAAGGCATGATCGCCAACAATTCCGAATTCGCCGGGCTGTCCCTGTC
CGAACTCAAGCTGCGCCAGAGATTCAACATCTTCGTGCTCGCCATCCACAGGCAGGGCAAAAACATCACGGACATGGGGC
CGAACACCAAGCTGGCGGCAGGGGACACGCTTCTTCTGGAAGGACCGCAGGAAGGAATGAACCGCATCCTGACCAAGCAG
CGCATCATCCCCCTGAGCCAGCGTCCTGCGGAAGCGCACAACCGCAGCAAACAGGGCTGGGCCATCCTGGCCATGGGGCT
GTTCATTTTTATCGGCCTGCTGGGCTCCTTTGAGCAATACGGGGAATTCTTCAAATTCTTCGCGCGCTTCAATCCCTTCT
ATCTCGCCTACATCGGAGCTCTCATCGTCATCATCTCCGGCTGCATCAAGCCGAAGGAAGCCTACCAGGCGGTGGACTGG
GGCATTATTTTTCTGATTCTGGGAATGCTGTGCGTGGGAGAAGCCATGAGCAAAACCGGGCTTGCCAAAGCCATTGCTTT
CGGCGTAGTGGATAATATAGGCCCGTTGGGGTGCCTGGTCGCCATCTCCGGCCTGTACCTGATCTGCTCTATCCTGACGG
AGATGATCTCCAACAATGCCGTAGCGGCCGTCATGGGGCCTCTGGCTTATGAAATGGCCCTGCAATTCGACGCCAACCCC
ATTCCCTTCATTCTGGCTGTCATGTTCGGCGCCAGCGCCAGCTTCTCCACCCCCATCGGCTACCAGACCAACACTTACGT
GTACAATGCGGGCGGTTACAAATTTAAGGACTTCGTCAAAGTGGGACTCCCCCTCAACCTGCTCCTCTGGGTCATTTTTA
CCTGCGCCATCGGCTGGTTGTATCCGCTCAAGTAG

Upstream 100 bases:

>100_bases
CCTTTTCAAACCCTTTCCGGAAAATTATTGCGGCTTGACAGATAGAAGCCGGGAAAGTAGGAGAGTTGGACCCTTTCCCC
ACACCTTCAACTTTCAAACC

Downstream 100 bases:

>100_bases
AGCGATAATAGCTTTGGAAGGCCCGGTCAACGGAAAGGAAACCAAGCACCCGGTCAAAGGCGCCATCATTCCCACGGGAA
CAAAAAACAATATCCCTGTT

Product: TrkA-C domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MLPLLNINSASVIGWLESAAAQQWIVGILLVLLFISFIKEWMPVEITALTGTAVLMLTGILSTRDVLSSFANSGPLTVVC
MFILSASLERTGLIGDLSKLFNKVAKGRELTALLVITLGAFMVSPFVNNTPVVVILMPIVLAFCRDHNIAASKLLIPLSY
ATILGGTCSVVGTSTNVVVLGQVQKLGYDGIQMFTVTPMGLIYAAAGLLYLWTLGRKWLPSRPTLSTMLPGGIQRDFLLQ
VRIPADSPHIGTTPINLMQTELLGTKIVEVRRRGFSMQEELQHINLEEGDRILFLCNARKVNQVREAKGVDLGWDDSRGL
ETLEQRDVQIVEGMIANNSEFAGLSLSELKLRQRFNIFVLAIHRQGKNITDMGPNTKLAAGDTLLLEGPQEGMNRILTKQ
RIIPLSQRPAEAHNRSKQGWAILAMGLFIFIGLLGSFEQYGEFFKFFARFNPFYLAYIGALIVIISGCIKPKEAYQAVDW
GIIFLILGMLCVGEAMSKTGLAKAIAFGVVDNIGPLGCLVAISGLYLICSILTEMISNNAVAAVMGPLAYEMALQFDANP
IPFILAVMFGASASFSTPIGYQTNTYVYNAGGYKFKDFVKVGLPLNLLLWVIFTCAIGWLYPLK

Sequences:

>Translated_624_residues
MLPLLNINSASVIGWLESAAAQQWIVGILLVLLFISFIKEWMPVEITALTGTAVLMLTGILSTRDVLSSFANSGPLTVVC
MFILSASLERTGLIGDLSKLFNKVAKGRELTALLVITLGAFMVSPFVNNTPVVVILMPIVLAFCRDHNIAASKLLIPLSY
ATILGGTCSVVGTSTNVVVLGQVQKLGYDGIQMFTVTPMGLIYAAAGLLYLWTLGRKWLPSRPTLSTMLPGGIQRDFLLQ
VRIPADSPHIGTTPINLMQTELLGTKIVEVRRRGFSMQEELQHINLEEGDRILFLCNARKVNQVREAKGVDLGWDDSRGL
ETLEQRDVQIVEGMIANNSEFAGLSLSELKLRQRFNIFVLAIHRQGKNITDMGPNTKLAAGDTLLLEGPQEGMNRILTKQ
RIIPLSQRPAEAHNRSKQGWAILAMGLFIFIGLLGSFEQYGEFFKFFARFNPFYLAYIGALIVIISGCIKPKEAYQAVDW
GIIFLILGMLCVGEAMSKTGLAKAIAFGVVDNIGPLGCLVAISGLYLICSILTEMISNNAVAAVMGPLAYEMALQFDANP
IPFILAVMFGASASFSTPIGYQTNTYVYNAGGYKFKDFVKVGLPLNLLLWVIFTCAIGWLYPLK
>Mature_624_residues
MLPLLNINSASVIGWLESAAAQQWIVGILLVLLFISFIKEWMPVEITALTGTAVLMLTGILSTRDVLSSFANSGPLTVVC
MFILSASLERTGLIGDLSKLFNKVAKGRELTALLVITLGAFMVSPFVNNTPVVVILMPIVLAFCRDHNIAASKLLIPLSY
ATILGGTCSVVGTSTNVVVLGQVQKLGYDGIQMFTVTPMGLIYAAAGLLYLWTLGRKWLPSRPTLSTMLPGGIQRDFLLQ
VRIPADSPHIGTTPINLMQTELLGTKIVEVRRRGFSMQEELQHINLEEGDRILFLCNARKVNQVREAKGVDLGWDDSRGL
ETLEQRDVQIVEGMIANNSEFAGLSLSELKLRQRFNIFVLAIHRQGKNITDMGPNTKLAAGDTLLLEGPQEGMNRILTKQ
RIIPLSQRPAEAHNRSKQGWAILAMGLFIFIGLLGSFEQYGEFFKFFARFNPFYLAYIGALIVIISGCIKPKEAYQAVDW
GIIFLILGMLCVGEAMSKTGLAKAIAFGVVDNIGPLGCLVAISGLYLICSILTEMISNNAVAAVMGPLAYEMALQFDANP
IPFILAVMFGASASFSTPIGYQTNTYVYNAGGYKFKDFVKVGLPLNLLLWVIFTCAIGWLYPLK

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 RCK C-terminal domains [H]

Homologues:

Organism=Escherichia coli, GI1788629, Length=621, Percent_Identity=27.0531400966184, Blast_Score=184, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898
- InterPro:   IPR006037 [H]

Pfam domain/function: PF00939 Na_sulph_symp; PF02080 TrkA_C [H]

EC number: NA

Molecular weight: Translated: 68178; Mature: 68178

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLLNINSASVIGWLESAAAQQWIVGILLVLLFISFIKEWMPVEITALTGTAVLMLTGI
CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
LSTRDVLSSFANSGPLTVVCMFILSASLERTGLIGDLSKLFNKVAKGRELTALLVITLGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
FMVSPFVNNTPVVVILMPIVLAFCRDHNIAASKLLIPLSYATILGGTCSVVGTSTNVVVL
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEE
GQVQKLGYDGIQMFTVTPMGLIYAAAGLLYLWTLGRKWLPSRPTLSTMLPGGIQRDFLLQ
ECHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCEEEE
VRIPADSPHIGTTPINLMQTELLGTKIVEVRRRGFSMQEELQHINLEEGDRILFLCNARK
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCHH
VNQVREAKGVDLGWDDSRGLETLEQRDVQIVEGMIANNSEFAGLSLSELKLRQRFNIFVL
HHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEE
AIHRQGKNITDMGPNTKLAAGDTLLLEGPQEGMNRILTKQRIIPLSQRPAEAHNRSKQGW
EEEECCCCCCCCCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCH
AILAMGLFIFIGLLGSFEQYGEFFKFFARFNPFYLAYIGALIVIISGCIKPKEAYQAVDW
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GIIFLILGMLCVGEAMSKTGLAKAIAFGVVDNIGPLGCLVAISGLYLICSILTEMISNNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
VAAVMGPLAYEMALQFDANPIPFILAVMFGASASFSTPIGYQTNTYVYNAGGYKFKDFVK
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHH
VGLPLNLLLWVIFTCAIGWLYPLK
HCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLPLLNINSASVIGWLESAAAQQWIVGILLVLLFISFIKEWMPVEITALTGTAVLMLTGI
CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
LSTRDVLSSFANSGPLTVVCMFILSASLERTGLIGDLSKLFNKVAKGRELTALLVITLGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
FMVSPFVNNTPVVVILMPIVLAFCRDHNIAASKLLIPLSYATILGGTCSVVGTSTNVVVL
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEE
GQVQKLGYDGIQMFTVTPMGLIYAAAGLLYLWTLGRKWLPSRPTLSTMLPGGIQRDFLLQ
ECHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCEEEE
VRIPADSPHIGTTPINLMQTELLGTKIVEVRRRGFSMQEELQHINLEEGDRILFLCNARK
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCHH
VNQVREAKGVDLGWDDSRGLETLEQRDVQIVEGMIANNSEFAGLSLSELKLRQRFNIFVL
HHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEE
AIHRQGKNITDMGPNTKLAAGDTLLLEGPQEGMNRILTKQRIIPLSQRPAEAHNRSKQGW
EEEECCCCCCCCCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCH
AILAMGLFIFIGLLGSFEQYGEFFKFFARFNPFYLAYIGALIVIISGCIKPKEAYQAVDW
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GIIFLILGMLCVGEAMSKTGLAKAIAFGVVDNIGPLGCLVAISGLYLICSILTEMISNNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
VAAVMGPLAYEMALQFDANPIPFILAVMFGASASFSTPIGYQTNTYVYNAGGYKFKDFVK
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHH
VGLPLNLLLWVIFTCAIGWLYPLK
HCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]