Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is rsuA [H]
Identifier: 187735933
GI number: 187735933
Start: 1731771
End: 1732463
Strand: Reverse
Name: rsuA [H]
Synonym: Amuc_1442
Alternate gene names: 187735933
Gene position: 1732463-1731771 (Counterclockwise)
Preceding gene: 187735936
Following gene: 187735932
Centisome position: 65.03
GC content: 59.88
Gene sequence:
>693_bases ATGAGACTGGATGCCCTTTTATCCCGCTACGGATATTGTTCCAGGAGGGAAGCGCCGGGTTGGATCAAACGCCACTCCAT TACATTCAAGGGAAAACCATGCTCCTCCCCCACGGACAAGGTGCAGGCGGAAGGCATCCTGCTGGACGGAGAACCTGTGG AATTCCCGGACGGCCTGTACGCCGCCCTTTACAAACCTGAAGGGTACACCTGCAGCCATGACGACGGGGAAGGGAATTTG ATTTACGACCTACTGCCCTTCCAGTGGCGGCACAGGAACCCTGCGGTTTCTTCCGTAGGACGGCTGGACAAGGAAACTTC CGGCCTGCTTCTCCTCACGGACGACGGAAAATTCATCCACCGCATGACCTCCCCCCGCCATCACGTCGCCAAAGTTTACG AAGCCGTCACGGAGGAGGACATTCCGACAGAAGCCGTGGAGTTGTTCGCCTCCGGAACCCTCACGCTGAACGGGGAAACC CGCCCCTGCGCCCCCGCCTTGCTGGAAATCCGGGAACCGCGACGCGCCCTGCTGACGCTTACGGAAGGAAAATACCACCA GGTTCGCCGCATGCTGGCTGCCGTAGGCGCTCCCGTCTTATCTCTGTGCCGTGTTTCCATCGGCTCCCTGCATCTGGACA GCCTGAACCTGAAACCGGGGGAATGGGCGCCCATCCGTCCGGATGCGCTGTAA
Upstream 100 bases:
>100_bases GCCCCACCAGGGCGGCCCCGCATGTAATAGTTTAATGCTATCAGCCGGGGAGGCATACTTCAACCTTGTTTTTTGTTCCC GTTAGGAAAAAATATGCCGC
Downstream 100 bases:
>100_bases ACCTCCCATCCGCCATGTGGATTCCCATTTCCGAAGCACCAATTGCCTGTTTTCCGCACTTTGAGGTGGCGGCGGAATCC GGGGACTGGATTGTGGTGGA
Product: pseudouridine synthase
Products: pseudouridine 5'-phosphate; H2O [C]
Alternate protein names: 16S pseudouridine 516 synthase; 16S pseudouridylate 516 synthase; rRNA pseudouridylate synthase A; rRNA-uridine isomerase A [H]
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MRLDALLSRYGYCSRREAPGWIKRHSITFKGKPCSSPTDKVQAEGILLDGEPVEFPDGLYAALYKPEGYTCSHDDGEGNL IYDLLPFQWRHRNPAVSSVGRLDKETSGLLLLTDDGKFIHRMTSPRHHVAKVYEAVTEEDIPTEAVELFASGTLTLNGET RPCAPALLEIREPRRALLTLTEGKYHQVRRMLAAVGAPVLSLCRVSIGSLHLDSLNLKPGEWAPIRPDAL
Sequences:
>Translated_230_residues MRLDALLSRYGYCSRREAPGWIKRHSITFKGKPCSSPTDKVQAEGILLDGEPVEFPDGLYAALYKPEGYTCSHDDGEGNL IYDLLPFQWRHRNPAVSSVGRLDKETSGLLLLTDDGKFIHRMTSPRHHVAKVYEAVTEEDIPTEAVELFASGTLTLNGET RPCAPALLEIREPRRALLTLTEGKYHQVRRMLAAVGAPVLSLCRVSIGSLHLDSLNLKPGEWAPIRPDAL >Mature_230_residues MRLDALLSRYGYCSRREAPGWIKRHSITFKGKPCSSPTDKVQAEGILLDGEPVEFPDGLYAALYKPEGYTCSHDDGEGNL IYDLLPFQWRHRNPAVSSVGRLDKETSGLLLLTDDGKFIHRMTSPRHHVAKVYEAVTEEDIPTEAVELFASGTLTLNGET RPCAPALLEIREPRRALLTLTEGKYHQVRRMLAAVGAPVLSLCRVSIGSLHLDSLNLKPGEWAPIRPDAL
Specific function: Responsible for synthesis of pseudouridine from uracil- 516 in 16S ribosomal RNA [H]
COG id: COG1187
COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S4 RNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788510, Length=229, Percent_Identity=38.8646288209607, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1790453, Length=235, Percent_Identity=30.6382978723404, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081838, Length=169, Percent_Identity=35.5029585798817, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1787524, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020103 - InterPro: IPR006145 - InterPro: IPR000748 - InterPro: IPR018496 - InterPro: IPR002942 [H]
Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]
EC number: 4.2.1.70 [C]
Molecular weight: Translated: 25544; Mature: 25544
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS50889 S4 ; PS01149 PSI_RSU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLDALLSRYGYCSRREAPGWIKRHSITFKGKPCSSPTDKVQAEGILLDGEPVEFPDGLY CCHHHHHHHCCCCCCCCCCCCEEECEEEECCCCCCCCHHHHEECEEEECCCCCCCCCCEE AALYKPEGYTCSHDDGEGNLIYDLLPFQWRHRNPAVSSVGRLDKETSGLLLLTDDGKFIH EEEECCCCCEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEH RMTSPRHHVAKVYEAVTEEDIPTEAVELFASGTLTLNGETRPCAPALLEIREPRRALLTL HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCCCCHHHHHHHCCCEEEEEE TEGKYHQVRRMLAAVGAPVLSLCRVSIGSLHLDSLNLKPGEWAPIRPDAL CCCHHHHHHHHHHHHCHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRLDALLSRYGYCSRREAPGWIKRHSITFKGKPCSSPTDKVQAEGILLDGEPVEFPDGLY CCHHHHHHHCCCCCCCCCCCCEEECEEEECCCCCCCCHHHHEECEEEECCCCCCCCCCEE AALYKPEGYTCSHDDGEGNLIYDLLPFQWRHRNPAVSSVGRLDKETSGLLLLTDDGKFIH EEEECCCCCEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEH RMTSPRHHVAKVYEAVTEEDIPTEAVELFASGTLTLNGETRPCAPALLEIREPRRALLTL HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCCCCHHHHHHHCCCEEEEEE TEGKYHQVRRMLAAVGAPVLSLCRVSIGSLHLDSLNLKPGEWAPIRPDAL CCCHHHHHHHHHHHHCHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: uracil; D-ribose phosphate [C]
Specific reaction: uracil + D-ribose phosphate = pseudouridine 5'-phosphate + H2O [C]
General reaction: addition of H2O; elimination of H2O; C-O bond cleavage [C]
Inhibitor: 1-(Tetrahydro-2-furanyl)-5-fluorouracil; 5-fluorouracil [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]