Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is bioF [H]
Identifier: 187735886
GI number: 187735886
Start: 1663872
End: 1665035
Strand: Direct
Name: bioF [H]
Synonym: Amuc_1393
Alternate gene names: 187735886
Gene position: 1663872-1665035 (Clockwise)
Preceding gene: 187735885
Following gene: 187735887
Centisome position: 62.46
GC content: 60.4
Gene sequence:
>1164_bases ATGAAGAATCCTGAACAGTTTTTGTCAGAGTTGAAGTCTGCGGGGCTGCTGCGCGTCCTGCGGGATGTGGAATGCCTGCC CGGAGGAATGGCCCGTCTGGCGGATGGCCGGGAAGCGGTCAATCTGGCAAGCAACGATTATCTGGGGCTGGCCCACCATC CGTCCCTGGCGGAGGCTTTTTCCCGTGCGGTGCGGGATGAAGGGGTCGGAGCCATGGCATCCCGCCTGGTGACGGGGACG CGGCGGGAACATTCCTGTCTGGAAGAGGCCCTGGCCGCTTTGAAGGGGACTGAAGCGGCGGTCAGTTTTTCCTCCGGTTA TGCTACCTCCCTGGGAGTGATTGCTTCTATTGCGGACCGGGAGGATACGGTGCTGATGGATAAGTTGTCCCATGCCAGCC TGATTGACGGGGCGCGTTTGTCCGGGGCGCGTTTGTCTACGTTCCTGCATAACGATATGGAGTCATTAAGGAAAAAACTG CAGCATTTGCGGGACGCGAATCCTTCCGGCGGGATTCTGGTAGTGACCGAATCCGTTTTCAGCATGGATGGAGACCGTGC CCCCCTTCGGGAAATTGTGCGTCTGAAGGATGAATTCGGCGCGTTGCTGCTGGTGGATGAAGCTCACGGATTCGGTGTGC TGGGAGAACACGGGGCCGGACTGGCGGAAGAGCTGGGTGTTTCCTCCCGGATAGATTTTCAAATGGGGACTTTGAGCAAG GCTGCCGGGGTAAGTGGTGGATATGTGGCCTGTTCCCGCGCCTGGGCGGATGTAATGGTTAATTCCGCCCGGTCCCTGAT TTATTCCACGGCTCCGCCTCCCGCTTTGGCCGCCGCCGCCCTGGCCGCGGTGGAAGTGATCCGCAGCGGGGAGGGAAAGG AATTGCGCCGCCGTGTTTCCGTGCTGGCAAACAGTTTGTCCGCCGCACTGGGGATGCCGGGAAGGCCTCTTTCTTCCATT TTCCCTGTTGTGGTGGGAGAAAACGATGCTGCCCTGGCTGCGGCGGATGCCCTGCTGGAACAGGGCTTTCTGGCTCCCGC CATCCGTTATCCTACGGTTCCCCGCGGAACGGCCCGGTTGCGCATTACGGTAACGGCTGCGCATGAATCCGGGCAGGTCA CGCGGCTGGGGACGGCGTTGAAGGAGCTGCTGCATGGGAAGTAA
Upstream 100 bases:
>100_bases GGGGGCGGATGCTGGTCAAATCCGCCGCTTCCATGGGCGGCCATAATGTGGTGCTGAGTCTGGCTGTGGACGGTTGAATA TTGTTGAATAGTGAACGCTT
Downstream 100 bases:
>100_bases CGCAGGCGTTGTTTTTGGTTCTCCGCATTGGAGCCGGTTCCTGTTTTTATGCGGGGCCTGCCGGAAATGGGATTATCCTC ATTGATGCCGCCATAAAAAA
Product: 8-amino-7-oxononanoate synthase
Products: NA
Alternate protein names: AONS; 7-keto-8-amino-pelargonic acid synthase; 7-KAP synthase; KAPA synthase; 8-amino-7-ketopelargonate synthase; L-alanine--pimeloyl-CoA ligase [H]
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MKNPEQFLSELKSAGLLRVLRDVECLPGGMARLADGREAVNLASNDYLGLAHHPSLAEAFSRAVRDEGVGAMASRLVTGT RREHSCLEEALAALKGTEAAVSFSSGYATSLGVIASIADREDTVLMDKLSHASLIDGARLSGARLSTFLHNDMESLRKKL QHLRDANPSGGILVVTESVFSMDGDRAPLREIVRLKDEFGALLLVDEAHGFGVLGEHGAGLAEELGVSSRIDFQMGTLSK AAGVSGGYVACSRAWADVMVNSARSLIYSTAPPPALAAAALAAVEVIRSGEGKELRRRVSVLANSLSAALGMPGRPLSSI FPVVVGENDAALAAADALLEQGFLAPAIRYPTVPRGTARLRITVTAAHESGQVTRLGTALKELLHGK
Sequences:
>Translated_387_residues MKNPEQFLSELKSAGLLRVLRDVECLPGGMARLADGREAVNLASNDYLGLAHHPSLAEAFSRAVRDEGVGAMASRLVTGT RREHSCLEEALAALKGTEAAVSFSSGYATSLGVIASIADREDTVLMDKLSHASLIDGARLSGARLSTFLHNDMESLRKKL QHLRDANPSGGILVVTESVFSMDGDRAPLREIVRLKDEFGALLLVDEAHGFGVLGEHGAGLAEELGVSSRIDFQMGTLSK AAGVSGGYVACSRAWADVMVNSARSLIYSTAPPPALAAAALAAVEVIRSGEGKELRRRVSVLANSLSAALGMPGRPLSSI FPVVVGENDAALAAADALLEQGFLAPAIRYPTVPRGTARLRITVTAAHESGQVTRLGTALKELLHGK >Mature_387_residues MKNPEQFLSELKSAGLLRVLRDVECLPGGMARLADGREAVNLASNDYLGLAHHPSLAEAFSRAVRDEGVGAMASRLVTGT RREHSCLEEALAALKGTEAAVSFSSGYATSLGVIASIADREDTVLMDKLSHASLIDGARLSGARLSTFLHNDMESLRKKL QHLRDANPSGGILVVTESVFSMDGDRAPLREIVRLKDEFGALLLVDEAHGFGVLGEHGAGLAEELGVSSRIDFQMGTLSK AAGVSGGYVACSRAWADVMVNSARSLIYSTAPPPALAAAALAAVEVIRSGEGKELRRRVSVLANSLSAALGMPGRPLSSI FPVVVGENDAALAAADALLEQGFLAPAIRYPTVPRGTARLRITVTAAHESGQVTRLGTALKELLHGK
Specific function: Catalyzes the decarboxylative condensation of pimeloyl- CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A, and carbon dioxide [H]
COG id: COG0156
COG function: function code H; 7-keto-8-aminopelargonate synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. BioF subfamily [H]
Homologues:
Organism=Homo sapiens, GI83977444, Length=335, Percent_Identity=36.7164179104478, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI83977442, Length=337, Percent_Identity=37.3887240356083, Blast_Score=195, Evalue=5e-50, Organism=Homo sapiens, GI83977440, Length=335, Percent_Identity=36.7164179104478, Blast_Score=195, Evalue=6e-50, Organism=Homo sapiens, GI7657118, Length=357, Percent_Identity=35.0140056022409, Blast_Score=192, Evalue=3e-49, Organism=Homo sapiens, GI284448556, Length=357, Percent_Identity=35.0140056022409, Blast_Score=192, Evalue=5e-49, Organism=Homo sapiens, GI4502025, Length=333, Percent_Identity=36.6366366366366, Blast_Score=184, Evalue=9e-47, Organism=Homo sapiens, GI40316939, Length=333, Percent_Identity=36.6366366366366, Blast_Score=184, Evalue=9e-47, Organism=Homo sapiens, GI4758668, Length=368, Percent_Identity=30.9782608695652, Blast_Score=172, Evalue=6e-43, Organism=Homo sapiens, GI119220554, Length=370, Percent_Identity=30.5405405405405, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI5454084, Length=385, Percent_Identity=27.7922077922078, Blast_Score=125, Evalue=8e-29, Organism=Escherichia coli, GI1786993, Length=366, Percent_Identity=43.4426229508197, Blast_Score=246, Evalue=3e-66, Organism=Escherichia coli, GI1790046, Length=379, Percent_Identity=34.5646437994723, Blast_Score=223, Evalue=2e-59, Organism=Caenorhabditis elegans, GI71994529, Length=375, Percent_Identity=31.7333333333333, Blast_Score=202, Evalue=3e-52, Organism=Caenorhabditis elegans, GI32566772, Length=397, Percent_Identity=28.463476070529, Blast_Score=158, Evalue=4e-39, Organism=Caenorhabditis elegans, GI17560914, Length=360, Percent_Identity=30, Blast_Score=152, Evalue=3e-37, Organism=Caenorhabditis elegans, GI17560912, Length=360, Percent_Identity=30, Blast_Score=152, Evalue=3e-37, Organism=Caenorhabditis elegans, GI71982625, Length=305, Percent_Identity=28.1967213114754, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI71982617, Length=305, Percent_Identity=28.1967213114754, Blast_Score=115, Evalue=4e-26, Organism=Saccharomyces cerevisiae, GI6320438, Length=356, Percent_Identity=34.5505617977528, Blast_Score=185, Evalue=9e-48, Organism=Saccharomyces cerevisiae, GI6320267, Length=346, Percent_Identity=28.9017341040462, Blast_Score=146, Evalue=7e-36, Organism=Saccharomyces cerevisiae, GI6323954, Length=217, Percent_Identity=31.3364055299539, Blast_Score=114, Evalue=3e-26, Organism=Drosophila melanogaster, GI24662918, Length=352, Percent_Identity=32.3863636363636, Blast_Score=193, Evalue=2e-49, Organism=Drosophila melanogaster, GI17137420, Length=350, Percent_Identity=34.2857142857143, Blast_Score=190, Evalue=1e-48, Organism=Drosophila melanogaster, GI17136286, Length=363, Percent_Identity=29.4765840220386, Blast_Score=145, Evalue=6e-35, Organism=Drosophila melanogaster, GI24653280, Length=260, Percent_Identity=29.6153846153846, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI24653276, Length=260, Percent_Identity=29.6153846153846, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI24653278, Length=260, Percent_Identity=29.6153846153846, Blast_Score=118, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022834 - InterPro: IPR001917 - InterPro: IPR004839 - InterPro: IPR004723 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.3.1.47 [H]
Molecular weight: Translated: 40621; Mature: 40621
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNPEQFLSELKSAGLLRVLRDVECLPGGMARLADGREAVNLASNDYLGLAHHPSLAEAF CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHH SRAVRDEGVGAMASRLVTGTRREHSCLEEALAALKGTEAAVSFSSGYATSLGVIASIADR HHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHCCC EDTVLMDKLSHASLIDGARLSGARLSTFLHNDMESLRKKLQHLRDANPSGGILVVTESVF CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH SMDGDRAPLREIVRLKDEFGALLLVDEAHGFGVLGEHGAGLAEELGVSSRIDFQMGTLSK HCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCEECCCCHH AAGVSGGYVACSRAWADVMVNSARSLIYSTAPPPALAAAALAAVEVIRSGEGKELRRRVS HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH VLANSLSAALGMPGRPLSSIFPVVVGENDAALAAADALLEQGFLAPAIRYPTVPRGTARL HHHHHHHHHHCCCCCCHHHCCCEEECCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEE RITVTAAHESGQVTRLGTALKELLHGK EEEEEEECCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKNPEQFLSELKSAGLLRVLRDVECLPGGMARLADGREAVNLASNDYLGLAHHPSLAEAF CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHH SRAVRDEGVGAMASRLVTGTRREHSCLEEALAALKGTEAAVSFSSGYATSLGVIASIADR HHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHCCC EDTVLMDKLSHASLIDGARLSGARLSTFLHNDMESLRKKLQHLRDANPSGGILVVTESVF CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH SMDGDRAPLREIVRLKDEFGALLLVDEAHGFGVLGEHGAGLAEELGVSSRIDFQMGTLSK HCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCEECCCCHH AAGVSGGYVACSRAWADVMVNSARSLIYSTAPPPALAAAALAAVEVIRSGEGKELRRRVS HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH VLANSLSAALGMPGRPLSSIFPVVVGENDAALAAADALLEQGFLAPAIRYPTVPRGTARL HHHHHHHHHHCCCCCCHHHCCCEEECCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEE RITVTAAHESGQVTRLGTALKELLHGK EEEEEEECCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA