Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735807
Identifier: 187735807
GI number: 187735807
Start: 1593140
End: 1594075
Strand: Reverse
Name: 187735807
Synonym: Amuc_1314
Alternate gene names: NA
Gene position: 1594075-1593140 (Counterclockwise)
Preceding gene: 187735808
Following gene: 187735804
Centisome position: 59.84
GC content: 54.27
Gene sequence:
>936_bases ATGAACGCTGATGCAATCAAAGTAAGGGAAATTCAGGTAAAGAGCATCCTGTCAACGTCAAATCTGCCTGTGGCCGATTA CTCGGTCAATCCTTACGTGGGCTGCCCCCACGCCTGTAAATACTGCTACGCCTCGTTCATGAAACGGTTCACCGGGCATC CGGAACCATGGGGAACCTTTCTGGACGTCAAATACTGGCCGGAAATACGCAACCCCGGGAAATACGCGGGAAAACAGCTG TTTATCGGTTCCGTGACCGACCCTTACGGACCTCAGGAAGAAGTCTACAAGAGGACAAGGGCGCTTCTGGAACAGCTTCA AGGCAGCGGCGCGGAAATCAGCATAGCTACAAAATCCGATTTGGTGCTGAGGGACCTGGATTTGATAAAAACATTTCCCC ATGCCCGCGTTTCCTGGTCCGTCAACACGCTTGACGAGCGCTTTCAGGCAGATATGGACATGGCGGTGAGCATCTCGCGG AGGCTGGCCGCCATGAAGGCCTTCCATGAGGCAGGAATCCGCACCACCTGCTTCATCTCCCCCATTTTTCCGGGCATTAC GGATATTCCGGCGATTGTGGAGCAGGCTGAAGACAAATGCAACCTGATCTGGCTGGAAAACCTGAATCTGCGGGGCAGCT ACAAATCCGTAATTCTGGAGTACATCAACAAACGCTATCCGCACCTGGTGCCCCTCTATCGGGAAATTTACCAGAAAGGC AGCCGCGGCTACTGGGAAGGACTGGACGCAGCAATACGGCAGCTGGCGGAAAAACGGGGGTTGCCGTACCTGCGCAATGA CGATTCCATGCACCGGCCGTTCAACGAACCGCCGGTTATCGTGAATTACTTTTACCATGAGCAGATCAAACGTTCCGCCA TGAAAAAAGGGGCGCTTCCGAATCCTCCGCCTCCCGCGGCGGCCTCCAGCTATTGA
Upstream 100 bases:
>100_bases AAAATTACAAACTCCATGACCCGGACTCTCCGTTGCTGCTGGGGCATCTGCTCCCTTCCGATACCGTGCAGCAGGGAATG CAAAGGAGCTTTTTAAAACC
Downstream 100 bases:
>100_bases TGTCAAAAACGCCTGATAACCCTGCATGGACTCCCAACAGCAACGCAGCTGGCCGGCACAGAAATTCCCCCTCCCGGGCG ATTTGCCTTAGCGCATTGGG
Product: Radical SAM domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 311
Protein sequence:
>311_residues MNADAIKVREIQVKSILSTSNLPVADYSVNPYVGCPHACKYCYASFMKRFTGHPEPWGTFLDVKYWPEIRNPGKYAGKQL FIGSVTDPYGPQEEVYKRTRALLEQLQGSGAEISIATKSDLVLRDLDLIKTFPHARVSWSVNTLDERFQADMDMAVSISR RLAAMKAFHEAGIRTTCFISPIFPGITDIPAIVEQAEDKCNLIWLENLNLRGSYKSVILEYINKRYPHLVPLYREIYQKG SRGYWEGLDAAIRQLAEKRGLPYLRNDDSMHRPFNEPPVIVNYFYHEQIKRSAMKKGALPNPPPPAAASSY
Sequences:
>Translated_311_residues MNADAIKVREIQVKSILSTSNLPVADYSVNPYVGCPHACKYCYASFMKRFTGHPEPWGTFLDVKYWPEIRNPGKYAGKQL FIGSVTDPYGPQEEVYKRTRALLEQLQGSGAEISIATKSDLVLRDLDLIKTFPHARVSWSVNTLDERFQADMDMAVSISR RLAAMKAFHEAGIRTTCFISPIFPGITDIPAIVEQAEDKCNLIWLENLNLRGSYKSVILEYINKRYPHLVPLYREIYQKG SRGYWEGLDAAIRQLAEKRGLPYLRNDDSMHRPFNEPPVIVNYFYHEQIKRSAMKKGALPNPPPPAAASSY >Mature_311_residues MNADAIKVREIQVKSILSTSNLPVADYSVNPYVGCPHACKYCYASFMKRFTGHPEPWGTFLDVKYWPEIRNPGKYAGKQL FIGSVTDPYGPQEEVYKRTRALLEQLQGSGAEISIATKSDLVLRDLDLIKTFPHARVSWSVNTLDERFQADMDMAVSISR RLAAMKAFHEAGIRTTCFISPIFPGITDIPAIVEQAEDKCNLIWLENLNLRGSYKSVILEYINKRYPHLVPLYREIYQKG SRGYWEGLDAAIRQLAEKRGLPYLRNDDSMHRPFNEPPVIVNYFYHEQIKRSAMKKGALPNPPPPAAASSY
Specific function: Unknown
COG id: COG1533
COG function: function code L; DNA repair photolyase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 35367; Mature: 35367
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNADAIKVREIQVKSILSTSNLPVADYSVNPYVGCPHACKYCYASFMKRFTGHPEPWGTF CCCCCEEEHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE LDVKYWPEIRNPGKYAGKQLFIGSVTDPYGPQEEVYKRTRALLEQLQGSGAEISIATKSD EEEEECCCCCCCHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC LVLRDLDLIKTFPHARVSWSVNTLDERFQADMDMAVSISRRLAAMKAFHEAGIRTTCFIS HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC PIFPGITDIPAIVEQAEDKCNLIWLENLNLRGSYKSVILEYINKRYPHLVPLYREIYQKG CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC SRGYWEGLDAAIRQLAEKRGLPYLRNDDSMHRPFNEPPVIVNYFYHEQIKRSAMKKGALP CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCC NPPPPAAASSY CCCCCCCCCCC >Mature Secondary Structure MNADAIKVREIQVKSILSTSNLPVADYSVNPYVGCPHACKYCYASFMKRFTGHPEPWGTF CCCCCEEEHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE LDVKYWPEIRNPGKYAGKQLFIGSVTDPYGPQEEVYKRTRALLEQLQGSGAEISIATKSD EEEEECCCCCCCHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC LVLRDLDLIKTFPHARVSWSVNTLDERFQADMDMAVSISRRLAAMKAFHEAGIRTTCFIS HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC PIFPGITDIPAIVEQAEDKCNLIWLENLNLRGSYKSVILEYINKRYPHLVPLYREIYQKG CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC SRGYWEGLDAAIRQLAEKRGLPYLRNDDSMHRPFNEPPVIVNYFYHEQIKRSAMKKGALP CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCC NPPPPAAASSY CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]