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The map label for this gene is radC [C]

Identifier: 187735725

GI number: 187735725

Start: 1480161

End: 1480901

Strand: Reverse

Name: radC [C]

Synonym: Amuc_1231

Alternate gene names: 187735725

Gene position: 1480901-1480161 (Counterclockwise)

Preceding gene: 187735726

Following gene: 187735722

Centisome position: 55.59

GC content: 51.01

Gene sequence:

>741_bases
ATGACCTACCGCAAACTTCAGGAACTGCCCTCTCAGTCTCTGCCCAGAGAAAAATTGCTCCGCCAAGGAAGGCACAGCCT
CAGCAACGCGGAACTGCTTGCTATCTTTCTCCGAATGGGGATCAAGGGGAAAAATGTGTTGGACATGTCCTCGGATCTGA
TTCAGTCTGCTGGCTCTCTAGATGCCCTAGCTCATATGGAAGCTGCTGAAATAGCGAACATTTGCAAGGGAATAGGCATG
GCTAAAGCCGCTACGCTGAGCGCTGCCTTTGAACTGGGAGCGAGGGCTCTCCGTGAAACTCTGTCACGTCAACCCATTCA
AACACCGGAAGATGTCTATGATTATCTGACTACAGCCATGCGCTGGAAGGAAAAGGAGACGGTGCTCGTTCTGCTGCTGG
ATACCAAGTGCCGCCTCATCAAACCCGTGGAAATATCCAGCGGGACCTTGAACGAATCCATTGCTCATCCACGTGACATA
TTACGCCCCACTGTCATTCATAACGCCTATGGCTTCATCCTTGCCCACAATCATCCCAGTGGAAATCCAGCCCCCAGCCG
TACGGACGACCTCCTGACCGAACGCGTGCGGGAATGCTCCAAATTATTAGGCGTTCGTTTTCTGGATCATGTAATCATTG
GTAAACCGACCGAAACAACCAACAAAAATTATTATAGTTACAACCATCCTGGCGGAGACCGCCTTAAAGACCCCGGTCAA
GAACGCACCCTCTATCACTGA

Upstream 100 bases:

>100_bases
ATCTCCGCCGGAGAAGCCACCCAGCAAACATTGACGGCAGGGGATACGCTGCGACATCTGCCTTCCGCCATTCTTTCTAC
CGCACGCCTCTGTTATTGAA

Downstream 100 bases:

>100_bases
ACAGCCGCCTATCTGAATTCCCGCCTGTTCCCTTCCTATCGAAAATAAGAGCCTCGTCTTCCGACGGGGCTCTTACTGAA
AAACTGGCGGAGAGAGTGGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTYRKLQELPSQSLPREKLLRQGRHSLSNAELLAIFLRMGIKGKNVLDMSSDLIQSAGSLDALAHMEAAEIANICKGIGM
AKAATLSAAFELGARALRETLSRQPIQTPEDVYDYLTTAMRWKEKETVLVLLLDTKCRLIKPVEISSGTLNESIAHPRDI
LRPTVIHNAYGFILAHNHPSGNPAPSRTDDLLTERVRECSKLLGVRFLDHVIIGKPTETTNKNYYSYNHPGGDRLKDPGQ
ERTLYH

Sequences:

>Translated_246_residues
MTYRKLQELPSQSLPREKLLRQGRHSLSNAELLAIFLRMGIKGKNVLDMSSDLIQSAGSLDALAHMEAAEIANICKGIGM
AKAATLSAAFELGARALRETLSRQPIQTPEDVYDYLTTAMRWKEKETVLVLLLDTKCRLIKPVEISSGTLNESIAHPRDI
LRPTVIHNAYGFILAHNHPSGNPAPSRTDDLLTERVRECSKLLGVRFLDHVIIGKPTETTNKNYYSYNHPGGDRLKDPGQ
ERTLYH
>Mature_245_residues
TYRKLQELPSQSLPREKLLRQGRHSLSNAELLAIFLRMGIKGKNVLDMSSDLIQSAGSLDALAHMEAAEIANICKGIGMA
KAATLSAAFELGARALRETLSRQPIQTPEDVYDYLTTAMRWKEKETVLVLLLDTKCRLIKPVEISSGTLNESIAHPRDIL
RPTVIHNAYGFILAHNHPSGNPAPSRTDDLLTERVRECSKLLGVRFLDHVIIGKPTETTNKNYYSYNHPGGDRLKDPGQE
RTLYH

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=203, Percent_Identity=38.9162561576355, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1788312, Length=101, Percent_Identity=38.6138613861386, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI2367100, Length=120, Percent_Identity=35.8333333333333, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788997, Length=147, Percent_Identity=31.2925170068027, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 27482; Mature: 27351

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYRKLQELPSQSLPREKLLRQGRHSLSNAELLAIFLRMGIKGKNVLDMSSDLIQSAGSL
CCHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCH
DALAHMEAAEIANICKGIGMAKAATLSAAFELGARALRETLSRQPIQTPEDVYDYLTTAM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RWKEKETVLVLLLDTKCRLIKPVEISSGTLNESIAHPRDILRPTVIHNAYGFILAHNHPS
HHCCCCEEEEEEECCCCCEECCEECCCCCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCC
GNPAPSRTDDLLTERVRECSKLLGVRFLDHVIIGKPTETTNKNYYSYNHPGGDRLKDPGQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCC
ERTLYH
CCCCCC
>Mature Secondary Structure 
TYRKLQELPSQSLPREKLLRQGRHSLSNAELLAIFLRMGIKGKNVLDMSSDLIQSAGSL
CHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCH
DALAHMEAAEIANICKGIGMAKAATLSAAFELGARALRETLSRQPIQTPEDVYDYLTTAM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RWKEKETVLVLLLDTKCRLIKPVEISSGTLNESIAHPRDILRPTVIHNAYGFILAHNHPS
HHCCCCEEEEEEECCCCCEECCEECCCCCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCC
GNPAPSRTDDLLTERVRECSKLLGVRFLDHVIIGKPTETTNKNYYSYNHPGGDRLKDPGQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCC
ERTLYH
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA