Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is recG [H]

Identifier: 187735706

GI number: 187735706

Start: 1448260

End: 1450359

Strand: Direct

Name: recG [H]

Synonym: Amuc_1212

Alternate gene names: 187735706

Gene position: 1448260-1450359 (Clockwise)

Preceding gene: 187735705

Following gene: 187735707

Centisome position: 54.36

GC content: 59.24

Gene sequence:

>2100_bases
ATGGTGCATGATAAGGGATACGTTCTTGGGTTCATGGCTGGAGAATTGCTTTTAACGTCTTCTCTGGAGGAATGCGTTTT
TATCCGCCCCAGAGAGTTGGCGGCCATGCAGGCGGCGGGAATGGCCTCCGTACGGGATTTGTTGTTCATGCTTCCGCGCA
GGTATGAAGACCGCCGCATGTTTGACCGCTATGATTCCCTGTCTTCCGGTGTGCCCGTCTGCCTGAGAGGAAGGGTGGTG
GATGTGGGCTGGAAAGGCTGGGGCGGACGGGGCGGCAAGGGCCGCGGCCGGTATGTGGAAGCCGTGCTGGCGGATGAGCA
GTCTTTGGGGCAGACCCGTTTTTCCTGCCTGTGGTTCAGCATGCCGGGCGTAGCCAGGATGTTGTGCGCCGGGCAGGAGA
TGATTGTATACGGGCGCATGAAACCGTATGGGAAAAAGCTCAGCATGGTGCATCCGGATTTTGAAATTATCCGGGAAGGA
GATGAGCAGTCCATTCATTTGAACCGCATTGTTCCCGTGTATGGCGGCCGCATGGGGATTGCGGTCCGCAGGCTGCGAGA
AATCGTATGGGAGACGCTGTCCAGGCTTTCCCCGGCTCCGGAACCGGAGGTGTATGAGTTTGTGCCGGACACTCCGTGCA
AAACGGCATTGAGGGATCTTCATTTTCCTGAGACCGCAGAGGCCCGGGACCGGGCGCGGCGCCGTTTTGCGTTGGAGGAA
TGCCTTGCTCAGCAGTTGAACGTGGCCTACAGAAGAAGGCGGGCGGATGAAGTGCCCGGCATGAGGACCGCAGGTTCCAG
CCATTTGGTGAAGGATCTGGCGGATTCCCTGCCGTTTGAGCTGACGGAGGCTCAGAAGCGCTGCGTGAGGGAGATTTACC
GGGATATGAAAGCCCCCCGTTCCATGAACCGCCTGCTTCAGGGGGATGTCGGGTCCGGAAAGACGCTGGTGGCTCTGTGC
GCCATGCTGCTGGCTGTGGAACACGGTTATTCCGCCGTGATGATGGCGCCCACGCAGATTCTGGCGGAACAGCATTATTT
GAAGTTCCGGCAGATGCTGGACAAGCTGGATGTGCCTGTTTCCCTGGTGACGGCGGACAGGAAGGAAGAATCCCATGTGT
CGTTCGGGAAGCAGGGCGGGATTGTGGTTGGCACGCATGCCCTGCTGTACGGGAAAAATGTGCCGGAGCGTGTGGGGCTG
GTCGTGATTGACGAACAGCACAAATTCGGCGTGAATCAGCGGGAGAAGCTGATTGACCGGGAAGAGCGCCCCGACGTGCT
GGTGATGACCGCTACCCCTATCCCCCGCACGCTGACGCTGACTTTTTACGGGGAGCTTGACGTTTCCATCCTGGACGGCG
TGCCCAGGGGGCGCGGGGCGGTCGTAACAGCCATCCGGACGGAGAAGGATAAGGGAAAAGTGCTGGCTTTCGTTCGGAAC
CAGCTGGAGGAAGGGAGGCAGATTTACGTGGTTTCCCCCCTGATTGACGGAGAGGATTCCCGGAAGGGGAAAGCCGTGAC
GAAGGAATGGGACGAGTGGAAGGCTCTGCTGCCTCATGTGGATGTGGGGCTGCTGCACGGCAGGATGTCTTCAGAGGAAA
AAGAGGCGGTGATGAAGGATTTCCGCTCCAACCGCATCAGCGTGCTGGTGTCCACCACGGTGGTGGAGGTGGGGGTGGAT
GTTCCGAATGCCACGGTGATGATCATCAATAATGCGGAAAGTTTCGGGCTTTCCCAGCTTCATCAGCTCCGGGGGCGCAT
CGGCCGCGGGTCGCACAAGTCCTACTGCATTTTGATGACGGACGCCCGTCCGGAGGATGAGCAATGGGAGAAGTTGCGCA
TCGTGGAAACTACGGCGAATGGATTTGACCTGGCGGAACAGGATTTGAGGTTACGCGGCCCTGGAGACGTGCTGGGTACG
TCCCAGAGCGGCCTGAAGGGCGTACGTTTTGAGGAATGGCTGCTGGATGCGCGCCTGATTCACCGCGGGCGGCAGCTGGC
GGAGGCTATTCTGGCGGAAGATCCCAATCTGGAATCCGCCAAATACCGCCCTCTCCGTTTTTTGCTGGAAGACGGGGCGG
GGAGGCGTGTGGCCGGGTAA

Upstream 100 bases:

>100_bases
CGTCCGGGACATAAATGGAGCTGGTTCATTTCCCGCGTGGATTATTACAGGCGCTGTCTGGAGACACGGCCCGCCGCAGC
GTTCTGACGGGTACGCGCAC

Downstream 100 bases:

>100_bases
GATTGTTTTTCTACCGTTTGCTGACGGTCAGCTTGTAAGAGGCGCATGACAGATAAGAGGGCAACGATTTATCCGCCGGA
ATGAATCTAAAGAGGCAAAG

Product: DEAD/DEAH box helicase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 699; Mature: 699

Protein sequence:

>699_residues
MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVV
DVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREG
DEQSIHLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE
CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALC
AMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPVSLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGL
VVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN
QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGVD
VPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGT
SQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG

Sequences:

>Translated_699_residues
MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVV
DVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREG
DEQSIHLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE
CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALC
AMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPVSLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGL
VVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN
QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGVD
VPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGT
SQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG
>Mature_699_residues
MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVV
DVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREG
DEQSIHLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE
CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALC
AMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPVSLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGL
VVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN
QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGVD
VPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGT
SQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG

Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup

COG id: COG1200

COG function: function code LK; RecG-like helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367254, Length=654, Percent_Identity=36.5443425076453, Blast_Score=363, Evalue=1e-101,
Organism=Escherichia coli, GI1787357, Length=430, Percent_Identity=36.2790697674419, Blast_Score=249, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR004609
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 78521; Mature: 78521

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRM
CCCCCCEEEEEHHHHHHHHHCHHHHEEECCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHH
FDRYDSLSSGVPVCLRGRVVDVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFS
HHHHHHHCCCCCEEEECEEEEECCCCCCCCCCCCCCCEEEEEHHCCHHHCCCEEEEEEEC
MPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREGDEQSIHLNRIVPVYGGRMGI
CCHHHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCCEEEEEEEEEECCCHHHH
AVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE
HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPR
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH
SMNRLLQGDVGSGKTLVALCAMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPV
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCE
SLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGLVVIDEQHKFGVNQREKLIDR
EEEECCCCCHHHHCCCCCCCEEEECEEEEECCCCCHHCCEEEEECCCCCCCCHHHHHHCC
EERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN
CCCCCEEEEECCCCCCEEEEEEECCCCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHH
QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKD
HHHCCCEEEEEECEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHH
FRSNRISVLVSTTVVEVGVDVPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMT
HCCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEE
DARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGTSQSGLKGVRFEEWLLDARLI
CCCCCCCHHCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
HRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRM
CCCCCCEEEEEHHHHHHHHHCHHHHEEECCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHH
FDRYDSLSSGVPVCLRGRVVDVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFS
HHHHHHHCCCCCEEEECEEEEECCCCCCCCCCCCCCCEEEEEHHCCHHHCCCEEEEEEEC
MPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREGDEQSIHLNRIVPVYGGRMGI
CCHHHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCCEEEEEEEEEECCCHHHH
AVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE
HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPR
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH
SMNRLLQGDVGSGKTLVALCAMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPV
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCE
SLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGLVVIDEQHKFGVNQREKLIDR
EEEECCCCCHHHHCCCCCCCEEEECEEEEECCCCCHHCCEEEEECCCCCCCCHHHHHHCC
EERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN
CCCCCEEEEECCCCCCEEEEEEECCCCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHH
QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKD
HHHCCCEEEEEECEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHH
FRSNRISVLVSTTVVEVGVDVPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMT
HCCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEE
DARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGTSQSGLKGVRFEEWLLDARLI
CCCCCCCHHCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
HRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]