Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is recG [H]
Identifier: 187735706
GI number: 187735706
Start: 1448260
End: 1450359
Strand: Direct
Name: recG [H]
Synonym: Amuc_1212
Alternate gene names: 187735706
Gene position: 1448260-1450359 (Clockwise)
Preceding gene: 187735705
Following gene: 187735707
Centisome position: 54.36
GC content: 59.24
Gene sequence:
>2100_bases ATGGTGCATGATAAGGGATACGTTCTTGGGTTCATGGCTGGAGAATTGCTTTTAACGTCTTCTCTGGAGGAATGCGTTTT TATCCGCCCCAGAGAGTTGGCGGCCATGCAGGCGGCGGGAATGGCCTCCGTACGGGATTTGTTGTTCATGCTTCCGCGCA GGTATGAAGACCGCCGCATGTTTGACCGCTATGATTCCCTGTCTTCCGGTGTGCCCGTCTGCCTGAGAGGAAGGGTGGTG GATGTGGGCTGGAAAGGCTGGGGCGGACGGGGCGGCAAGGGCCGCGGCCGGTATGTGGAAGCCGTGCTGGCGGATGAGCA GTCTTTGGGGCAGACCCGTTTTTCCTGCCTGTGGTTCAGCATGCCGGGCGTAGCCAGGATGTTGTGCGCCGGGCAGGAGA TGATTGTATACGGGCGCATGAAACCGTATGGGAAAAAGCTCAGCATGGTGCATCCGGATTTTGAAATTATCCGGGAAGGA GATGAGCAGTCCATTCATTTGAACCGCATTGTTCCCGTGTATGGCGGCCGCATGGGGATTGCGGTCCGCAGGCTGCGAGA AATCGTATGGGAGACGCTGTCCAGGCTTTCCCCGGCTCCGGAACCGGAGGTGTATGAGTTTGTGCCGGACACTCCGTGCA AAACGGCATTGAGGGATCTTCATTTTCCTGAGACCGCAGAGGCCCGGGACCGGGCGCGGCGCCGTTTTGCGTTGGAGGAA TGCCTTGCTCAGCAGTTGAACGTGGCCTACAGAAGAAGGCGGGCGGATGAAGTGCCCGGCATGAGGACCGCAGGTTCCAG CCATTTGGTGAAGGATCTGGCGGATTCCCTGCCGTTTGAGCTGACGGAGGCTCAGAAGCGCTGCGTGAGGGAGATTTACC GGGATATGAAAGCCCCCCGTTCCATGAACCGCCTGCTTCAGGGGGATGTCGGGTCCGGAAAGACGCTGGTGGCTCTGTGC GCCATGCTGCTGGCTGTGGAACACGGTTATTCCGCCGTGATGATGGCGCCCACGCAGATTCTGGCGGAACAGCATTATTT GAAGTTCCGGCAGATGCTGGACAAGCTGGATGTGCCTGTTTCCCTGGTGACGGCGGACAGGAAGGAAGAATCCCATGTGT CGTTCGGGAAGCAGGGCGGGATTGTGGTTGGCACGCATGCCCTGCTGTACGGGAAAAATGTGCCGGAGCGTGTGGGGCTG GTCGTGATTGACGAACAGCACAAATTCGGCGTGAATCAGCGGGAGAAGCTGATTGACCGGGAAGAGCGCCCCGACGTGCT GGTGATGACCGCTACCCCTATCCCCCGCACGCTGACGCTGACTTTTTACGGGGAGCTTGACGTTTCCATCCTGGACGGCG TGCCCAGGGGGCGCGGGGCGGTCGTAACAGCCATCCGGACGGAGAAGGATAAGGGAAAAGTGCTGGCTTTCGTTCGGAAC CAGCTGGAGGAAGGGAGGCAGATTTACGTGGTTTCCCCCCTGATTGACGGAGAGGATTCCCGGAAGGGGAAAGCCGTGAC GAAGGAATGGGACGAGTGGAAGGCTCTGCTGCCTCATGTGGATGTGGGGCTGCTGCACGGCAGGATGTCTTCAGAGGAAA AAGAGGCGGTGATGAAGGATTTCCGCTCCAACCGCATCAGCGTGCTGGTGTCCACCACGGTGGTGGAGGTGGGGGTGGAT GTTCCGAATGCCACGGTGATGATCATCAATAATGCGGAAAGTTTCGGGCTTTCCCAGCTTCATCAGCTCCGGGGGCGCAT CGGCCGCGGGTCGCACAAGTCCTACTGCATTTTGATGACGGACGCCCGTCCGGAGGATGAGCAATGGGAGAAGTTGCGCA TCGTGGAAACTACGGCGAATGGATTTGACCTGGCGGAACAGGATTTGAGGTTACGCGGCCCTGGAGACGTGCTGGGTACG TCCCAGAGCGGCCTGAAGGGCGTACGTTTTGAGGAATGGCTGCTGGATGCGCGCCTGATTCACCGCGGGCGGCAGCTGGC GGAGGCTATTCTGGCGGAAGATCCCAATCTGGAATCCGCCAAATACCGCCCTCTCCGTTTTTTGCTGGAAGACGGGGCGG GGAGGCGTGTGGCCGGGTAA
Upstream 100 bases:
>100_bases CGTCCGGGACATAAATGGAGCTGGTTCATTTCCCGCGTGGATTATTACAGGCGCTGTCTGGAGACACGGCCCGCCGCAGC GTTCTGACGGGTACGCGCAC
Downstream 100 bases:
>100_bases GATTGTTTTTCTACCGTTTGCTGACGGTCAGCTTGTAAGAGGCGCATGACAGATAAGAGGGCAACGATTTATCCGCCGGA ATGAATCTAAAGAGGCAAAG
Product: DEAD/DEAH box helicase domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 699; Mature: 699
Protein sequence:
>699_residues MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVV DVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREG DEQSIHLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALC AMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPVSLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGL VVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGVD VPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGT SQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG
Sequences:
>Translated_699_residues MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVV DVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREG DEQSIHLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALC AMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPVSLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGL VVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGVD VPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGT SQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG >Mature_699_residues MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRMFDRYDSLSSGVPVCLRGRVV DVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFSMPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREG DEQSIHLNRIVPVYGGRMGIAVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPRSMNRLLQGDVGSGKTLVALC AMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPVSLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGL VVIDEQHKFGVNQREKLIDREERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKDFRSNRISVLVSTTVVEVGVD VPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMTDARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGT SQSGLKGVRFEEWLLDARLIHRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=654, Percent_Identity=36.5443425076453, Blast_Score=363, Evalue=1e-101, Organism=Escherichia coli, GI1787357, Length=430, Percent_Identity=36.2790697674419, Blast_Score=249, Evalue=6e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 78521; Mature: 78521
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRM CCCCCCEEEEEHHHHHHHHHCHHHHEEECCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHH FDRYDSLSSGVPVCLRGRVVDVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFS HHHHHHHCCCCCEEEECEEEEECCCCCCCCCCCCCCCEEEEEHHCCHHHCCCEEEEEEEC MPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREGDEQSIHLNRIVPVYGGRMGI CCHHHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCCEEEEEEEEEECCCHHHH AVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPR HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH SMNRLLQGDVGSGKTLVALCAMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPV HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCE SLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGLVVIDEQHKFGVNQREKLIDR EEEECCCCCHHHHCCCCCCCEEEECEEEEECCCCCHHCCEEEEECCCCCCCCHHHHHHCC EERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN CCCCCEEEEECCCCCCEEEEEEECCCCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHH QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKD HHHCCCEEEEEECEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHH FRSNRISVLVSTTVVEVGVDVPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMT HCCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEE DARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGTSQSGLKGVRFEEWLLDARLI CCCCCCCHHCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH HRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure MVHDKGYVLGFMAGELLLTSSLEECVFIRPRELAAMQAAGMASVRDLLFMLPRRYEDRRM CCCCCCEEEEEHHHHHHHHHCHHHHEEECCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHH FDRYDSLSSGVPVCLRGRVVDVGWKGWGGRGGKGRGRYVEAVLADEQSLGQTRFSCLWFS HHHHHHHCCCCCEEEECEEEEECCCCCCCCCCCCCCCEEEEEHHCCHHHCCCEEEEEEEC MPGVARMLCAGQEMIVYGRMKPYGKKLSMVHPDFEIIREGDEQSIHLNRIVPVYGGRMGI CCHHHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCCEEEEEEEEEECCCHHHH AVRRLREIVWETLSRLSPAPEPEVYEFVPDTPCKTALRDLHFPETAEARDRARRRFALEE HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH CLAQQLNVAYRRRRADEVPGMRTAGSSHLVKDLADSLPFELTEAQKRCVREIYRDMKAPR HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH SMNRLLQGDVGSGKTLVALCAMLLAVEHGYSAVMMAPTQILAEQHYLKFRQMLDKLDVPV HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCE SLVTADRKEESHVSFGKQGGIVVGTHALLYGKNVPERVGLVVIDEQHKFGVNQREKLIDR EEEECCCCCHHHHCCCCCCCEEEECEEEEECCCCCHHCCEEEEECCCCCCCCHHHHHHCC EERPDVLVMTATPIPRTLTLTFYGELDVSILDGVPRGRGAVVTAIRTEKDKGKVLAFVRN CCCCCEEEEECCCCCCEEEEEEECCCCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHH QLEEGRQIYVVSPLIDGEDSRKGKAVTKEWDEWKALLPHVDVGLLHGRMSSEEKEAVMKD HHHCCCEEEEEECEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHH FRSNRISVLVSTTVVEVGVDVPNATVMIINNAESFGLSQLHQLRGRIGRGSHKSYCILMT HCCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEE DARPEDEQWEKLRIVETTANGFDLAEQDLRLRGPGDVLGTSQSGLKGVRFEEWLLDARLI CCCCCCCHHCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH HRGRQLAEAILAEDPNLESAKYRPLRFLLEDGAGRRVAG HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]