Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735573
Identifier: 187735573
GI number: 187735573
Start: 1288503
End: 1289528
Strand: Reverse
Name: 187735573
Synonym: Amuc_1078
Alternate gene names: NA
Gene position: 1289528-1288503 (Counterclockwise)
Preceding gene: 187735574
Following gene: 187735572
Centisome position: 48.4
GC content: 60.62
Gene sequence:
>1026_bases ATGGTAAACTACCGGCAGCGTCAACAGGCATTACGGAAGGGGCTCTTCGGGAGCCCCCTCCTGTCCGCATGCCTGCTCAC GCTGCCGGTTCTGGTTTCCGCAGAAACCGCCAGGGCGGACATCCAGACAGGCCGGAGCGCCACCCGCGCCCTGGCGAACA GTTCCGGACGGCCCAAAGGCCCCGTCATCGTCACCCCAACGCAACGGGACCCCCTGCCCCGGGTCATCGTCAAATCGCCT GTTGCTGCAGAGGGAGGAAAGCGGCCCGCTCCCCGCATCCTTCCCAGGACGTCCAGGCAAAGCCCCGGCACCTATCCCTG GCGTCTCAACATTACCGCCACGGTCTTCTGGGTGGGGGAAGAACCCACGGAACGCAATCCGGTAGCCAACCACAAAAGCT CGTGGGATTCCGCATGGCGGGAAAACTTCGGCGGCTTCGACAACCCGGATCCCGTTTGCCGCACGAGGGACTTCCGCCCG AAAACATTCATCCCCCGGCAAAACCCCTTTTACGTGGCGCTCCCTTATAATGACGTTTCCAGAGGGGAGCATAAGGCGGA GGCGTCACGGGTCATCCCGTGGTTCCGCCGCGAATATGCGGGAAAGGGGCAATCCGTCTGCAAGGGCAGATGGGTGCAAA TCGTCTACAACAAGCGTTCCTGTTTTGCCCAATGGGAAGACTGCGGCCCCTTCACCACGGAAGACTGGCCCTACGTCTTC GGAGACAAGCCTCCCGTCAATACCCAGAACAAAGGGGCGGGCATTGACATCTCCCCTGCCGTACGCGACTATCTGGGCAT TACGGGAGGAACAGCCATTGTCCACTGGCGCTTTGTGGAATTTTACCGCATTCCCCGCGGCCCGTGGTCCAAATACGGGG ACAACAATCCCTTTGTCAATGCCGGGCTGGGAGCCGGGAAAAAATCCCTTCAGTTACGGGAAGACCGTCTGCGCCAGCAG CAGGAAGCCATTCAGCGGGAGCTATTGAAGGATCCCGCGAAACTCAGAAGGGAACTCCAGGGATAA
Upstream 100 bases:
>100_bases TCGTGGACTGCGCCATGCGCCGCAATGAAAGCCGCGGCCTTCATTTCAATACGGATTATCCCGGCAAGCTGGACCACCGC TTCGTCACCCAACTGCACCG
Downstream 100 bases:
>100_bases CCCCCTGTGCCGCCGCAGCCATGCAACGCCCACGCATTCTACATATTTTCAGCCGTTACGGCGAGGTTGGGGGGGAAGAA ATCTGCTTCCATGCCATTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 341; Mature: 341
Protein sequence:
>341_residues MVNYRQRQQALRKGLFGSPLLSACLLTLPVLVSAETARADIQTGRSATRALANSSGRPKGPVIVTPTQRDPLPRVIVKSP VAAEGGKRPAPRILPRTSRQSPGTYPWRLNITATVFWVGEEPTERNPVANHKSSWDSAWRENFGGFDNPDPVCRTRDFRP KTFIPRQNPFYVALPYNDVSRGEHKAEASRVIPWFRREYAGKGQSVCKGRWVQIVYNKRSCFAQWEDCGPFTTEDWPYVF GDKPPVNTQNKGAGIDISPAVRDYLGITGGTAIVHWRFVEFYRIPRGPWSKYGDNNPFVNAGLGAGKKSLQLREDRLRQQ QEAIQRELLKDPAKLRRELQG
Sequences:
>Translated_341_residues MVNYRQRQQALRKGLFGSPLLSACLLTLPVLVSAETARADIQTGRSATRALANSSGRPKGPVIVTPTQRDPLPRVIVKSP VAAEGGKRPAPRILPRTSRQSPGTYPWRLNITATVFWVGEEPTERNPVANHKSSWDSAWRENFGGFDNPDPVCRTRDFRP KTFIPRQNPFYVALPYNDVSRGEHKAEASRVIPWFRREYAGKGQSVCKGRWVQIVYNKRSCFAQWEDCGPFTTEDWPYVF GDKPPVNTQNKGAGIDISPAVRDYLGITGGTAIVHWRFVEFYRIPRGPWSKYGDNNPFVNAGLGAGKKSLQLREDRLRQQ QEAIQRELLKDPAKLRRELQG >Mature_341_residues MVNYRQRQQALRKGLFGSPLLSACLLTLPVLVSAETARADIQTGRSATRALANSSGRPKGPVIVTPTQRDPLPRVIVKSP VAAEGGKRPAPRILPRTSRQSPGTYPWRLNITATVFWVGEEPTERNPVANHKSSWDSAWRENFGGFDNPDPVCRTRDFRP KTFIPRQNPFYVALPYNDVSRGEHKAEASRVIPWFRREYAGKGQSVCKGRWVQIVYNKRSCFAQWEDCGPFTTEDWPYVF GDKPPVNTQNKGAGIDISPAVRDYLGITGGTAIVHWRFVEFYRIPRGPWSKYGDNNPFVNAGLGAGKKSLQLREDRLRQQ QEAIQRELLKDPAKLRRELQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38498; Mature: 38498
Theoretical pI: Translated: 10.70; Mature: 10.70
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00894 HTH_DEOR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNYRQRQQALRKGLFGSPLLSACLLTLPVLVSAETARADIQTGRSATRALANSSGRPKG CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHCCCCCCCC PVIVTPTQRDPLPRVIVKSPVAAEGGKRPAPRILPRTSRQSPGTYPWRLNITATVFWVGE CEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC EPTERNPVANHKSSWDSAWRENFGGFDNPDPVCRTRDFRPKTFIPRQNPFYVALPYNDVS CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC RGEHKAEASRVIPWFRREYAGKGQSVCKGRWVQIVYNKRSCFAQWEDCGPFTTEDWPYVF CCHHHHHHHHCCHHHHHHHCCCCCHHHCCCEEEEEEECCHHHHHHHCCCCCCCCCCCEEE GDKPPVNTQNKGAGIDISPAVRDYLGITGGTAIVHWRFVEFYRIPRGPWSKYGDNNPFVN CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCCEEE AGLGAGKKSLQLREDRLRQQQEAIQRELLKDPAKLRRELQG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure MVNYRQRQQALRKGLFGSPLLSACLLTLPVLVSAETARADIQTGRSATRALANSSGRPKG CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHCCCCCCCC PVIVTPTQRDPLPRVIVKSPVAAEGGKRPAPRILPRTSRQSPGTYPWRLNITATVFWVGE CEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC EPTERNPVANHKSSWDSAWRENFGGFDNPDPVCRTRDFRPKTFIPRQNPFYVALPYNDVS CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC RGEHKAEASRVIPWFRREYAGKGQSVCKGRWVQIVYNKRSCFAQWEDCGPFTTEDWPYVF CCHHHHHHHHCCHHHHHHHCCCCCHHHCCCEEEEEEECCHHHHHHHCCCCCCCCCCCEEE GDKPPVNTQNKGAGIDISPAVRDYLGITGGTAIVHWRFVEFYRIPRGPWSKYGDNNPFVN CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCCEEE AGLGAGKKSLQLREDRLRQQQEAIQRELLKDPAKLRRELQG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA