Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735515
Identifier: 187735515
GI number: 187735515
Start: 1211974
End: 1213614
Strand: Reverse
Name: 187735515
Synonym: Amuc_1020
Alternate gene names: NA
Gene position: 1213614-1211974 (Counterclockwise)
Preceding gene: 187735516
Following gene: 187735514
Centisome position: 45.55
GC content: 53.2
Gene sequence:
>1641_bases ATGAATAATTATATACCCCTGAACAAGGCGGTCGGCCCGAAGCTTATCTGCGACGGGGAGCAGGCTCTCATCCCGCAGAA ACTCGGAGTTGACGCGATGGAGTTCAACTTTGACGGTTCGGCGTGCGAGCACGCCACTTGCGCCGGAGCGCCGGAAATGT TCATCAAGGTCGAGGAAGACGGCCTGTATTATTTCGGCGTGGAAGCCGACGACACAGGCAGCATCTCCATTGCCAACGAG AAACTTTGTGAGAAGGATGGAACGAAGCCCAACGGCAAGCTGAATCTGGCAACTGGTGCCAGATACCTGAAAGCGGGCTA TTACAAGGTGGCTCTGTCGTGGACCAACAACGCCTACCCCCCCGTCAGCAACAACGCTGCCGCGTTCAACGTCACGATGG ACAGGGAACCCATTCAGGCAGGGAAGTATGAAGGCAACTCGACGATGAAACGCGAATTCTCGCCGTCCCCCAAAATCAAA TTGTGGACGATTGAAAAGGAATCCACCATCACCTGTGAAGAGTCCAGGAAAGTGGAGGTGACGCTCGAAGAACCTGCTCC TGTCGTTGAAGAAAGCGAAGGCATATGCGAAACGTATATCATTCCCCCCCAGATTTTTGTAACGGCTTGCAAGGATGAAG TGCTCGACGAGTGGAGACTGCGCGTGCAGCAAGTTTCCGCCGGTTCCAGGATTCTCTTGCGCACGGGAGGATACAGGGAT GCCCTTAAAAATCCCCCTGTCACCGAAGAAGAAGCTATAGATGCTGTCAATGAAATGAACCGTTACCAGTCTCATAGACT CGGCGCATGGCATACTCAGGAGGCATCCCTCGCCCACGAGGAACACCACCGCCGAGAATTTAATGACGCCTTCCAATTCT ACTGGGACAATTTGAGAATACAGGATACGCTTGAAATGAAGCATGAATCTTGTGAAAAAGTTCCGAAAATGGAAGAGTTT CTGGAAAATATGCAGCCATTCGTTACCGAGTTGAGGAATATGTATTCTGACGCTGTCTATAACTATGTCTTGGTATTGCC GGATGATGCCAATGATCGTCCCTACTGTGCCGGACAAAAAGTTCTGAACGAGGCGACCCGGAAGATTATTGCCCAGGCAA AGGCCAATGGATGGAGCAGGGTACCCGATGAAGTCACGGAACCGGGAACGATTGAACCGCCCTGTTTCCTTCCGCCCGTC AACGGCATGTATGCCCGCAGCGTGGCTGCTGCGGGGGAACAGGCTCCCTTGACCCTCTCCATTGCGGATACCTCCCGGTT CAGGGAGGGCAGAATCACAGTCCGCTTCCGCAACGAAGGAAACGAGCCTGTCCGGATTCCGGACGAAATCAACGACGAAA CAGCCGATTATTTCTTCCTGACGGTGTTGAGGACGGAACGGGGGAACTTCCGCGTCCTGAACAGGAAAGTCGGGAAAATA ACCTTCAATCGTTCCTTGAACTACCGGGAACTGGCCCCCGGCCAGGAATACAGCGTCACGATTCCGGTGTGTCTGGATGA AGTCGATCTGGAAGGCTGGAAACAATGTTCTTGTGAACTGGAAACGCGCTACTATAATCAGCAGGGTAAGGATTGTTTCC GGGGGATGCTCCGGGCGACGGCCAGGCTCGCGCTGCAATGA
Upstream 100 bases:
>100_bases TCCTTCATCACGTCCGGGACGTGTTGTTGTTCTTTTTGGAATTCCTTATGTTCATTTGAGAGCTAAATGGTTAGTTCTCA AACAGGAAACGATCAGGAAC
Downstream 100 bases:
>100_bases AAAAAATCTTCCGGTATTTAATACTTCTGGCAAACCTGTCCCTCCATGCTGCGGCGTGGGGGGACATGGCCGACAACGGA GTGGAATGTTCCGTGGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 546; Mature: 546
Protein sequence:
>546_residues MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEEDGLYYFGVEADDTGSISIANE KLCEKDGTKPNGKLNLATGARYLKAGYYKVALSWTNNAYPPVSNNAAAFNVTMDREPIQAGKYEGNSTMKREFSPSPKIK LWTIEKESTITCEESRKVEVTLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRIQDTLEMKHESCEKVPKMEEF LENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQKVLNEATRKIIAQAKANGWSRVPDEVTEPGTIEPPCFLPPV NGMYARSVAAAGEQAPLTLSIADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFRGMLRATARLALQ
Sequences:
>Translated_546_residues MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEEDGLYYFGVEADDTGSISIANE KLCEKDGTKPNGKLNLATGARYLKAGYYKVALSWTNNAYPPVSNNAAAFNVTMDREPIQAGKYEGNSTMKREFSPSPKIK LWTIEKESTITCEESRKVEVTLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRIQDTLEMKHESCEKVPKMEEF LENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQKVLNEATRKIIAQAKANGWSRVPDEVTEPGTIEPPCFLPPV NGMYARSVAAAGEQAPLTLSIADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFRGMLRATARLALQ >Mature_546_residues MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEEDGLYYFGVEADDTGSISIANE KLCEKDGTKPNGKLNLATGARYLKAGYYKVALSWTNNAYPPVSNNAAAFNVTMDREPIQAGKYEGNSTMKREFSPSPKIK LWTIEKESTITCEESRKVEVTLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRIQDTLEMKHESCEKVPKMEEF LENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQKVLNEATRKIIAQAKANGWSRVPDEVTEPGTIEPPCFLPPV NGMYARSVAAAGEQAPLTLSIADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFRGMLRATARLALQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61824; Mature: 61824
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEED CCCCCCCCCCCCCEEEECCCHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC GLYYFGVEADDTGSISIANEKLCEKDGTKPNGKLNLATGARYLKAGYYKVALSWTNNAYP CEEEEEEECCCCCCEEECCHHHHHHCCCCCCCEEEECCCCHHHHCCEEEEEEEECCCCCC PVSNNAAAFNVTMDREPIQAGKYEGNSTMKREFSPSPKIKLWTIEKESTITCEESRKVEV CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCEEEE TLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD EECCCCCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRI HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE QDTLEMKHESCEKVPKMEEFLENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQK EHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHH VLNEATRKIIAQAKANGWSRVPDEVTEPGTIEPPCFLPPVNGMYARSVAAAGEQAPLTLS HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEE IADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI ECCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECEE TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFRGMLRAT EECCCCCHHCCCCCCCEEEEEEEEEECCCCCCHHHCCEEEEHHHHCCCCHHHHHHHHHHH ARLALQ HHHHCC >Mature Secondary Structure MNNYIPLNKAVGPKLICDGEQALIPQKLGVDAMEFNFDGSACEHATCAGAPEMFIKVEED CCCCCCCCCCCCCEEEECCCHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC GLYYFGVEADDTGSISIANEKLCEKDGTKPNGKLNLATGARYLKAGYYKVALSWTNNAYP CEEEEEEECCCCCCEEECCHHHHHHCCCCCCCEEEECCCCHHHHCCEEEEEEEECCCCCC PVSNNAAAFNVTMDREPIQAGKYEGNSTMKREFSPSPKIKLWTIEKESTITCEESRKVEV CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCEEEE TLEEPAPVVEESEGICETYIIPPQIFVTACKDEVLDEWRLRVQQVSAGSRILLRTGGYRD EECCCCCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH ALKNPPVTEEEAIDAVNEMNRYQSHRLGAWHTQEASLAHEEHHRREFNDAFQFYWDNLRI HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE QDTLEMKHESCEKVPKMEEFLENMQPFVTELRNMYSDAVYNYVLVLPDDANDRPYCAGQK EHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHH VLNEATRKIIAQAKANGWSRVPDEVTEPGTIEPPCFLPPVNGMYARSVAAAGEQAPLTLS HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEE IADTSRFREGRITVRFRNEGNEPVRIPDEINDETADYFFLTVLRTERGNFRVLNRKVGKI ECCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECEE TFNRSLNYRELAPGQEYSVTIPVCLDEVDLEGWKQCSCELETRYYNQQGKDCFRGMLRAT EECCCCCHHCCCCCCCEEEEEEEEEECCCCCCHHHCCEEEEHHHHCCCCHHHHHHHHHHH ARLALQ HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA