Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yhgN [C]
Identifier: 187735513
GI number: 187735513
Start: 1210602
End: 1211207
Strand: Reverse
Name: yhgN [C]
Synonym: Amuc_1018
Alternate gene names: 187735513
Gene position: 1211207-1210602 (Counterclockwise)
Preceding gene: 187735514
Following gene: 187735512
Centisome position: 45.46
GC content: 55.45
Gene sequence:
>606_bases ATGCAGGACTTCCTTTCCACTGTTATTCTTCTGTTCATCGTCATCGACCCGGTGGGTCTGGCGCCCATGATCCAGGGAAT GCTGAAAAAATACTCGCCCGCCCAGCAGAAGGCTATTCTGACACGGGAGCTTGTATTTGCGTTGAGCCTGCTGCTCCTTT TCTTCTTTTCCGGAAAATTCCTGCTGAACCTGCTGGGGCTGGAACCTTCCACCCTGAGCATTTCCGGAGGCATCCTGCTG TTTCTCGTAGCGCTGGGCATGGTCTTCCCCGCCAAGGATATGCTTTCTTCTTCCGGACGAGCGGACGGAAAAGACGAACC CTTCATTGTTCCCATCGCCATGCCCCTGATGGCCGGCCCCTCTTCCCTGTCCATCATTATGCTGCACGCCTCCCAGACTC CGGACAGCATTTCCCAGATGACCTATGCCGGGGCCATCGTGACCGCCTGGTTCCTCTCCGGAATGGTGCTTTTCATCGCC CAGAAGTTCCTGCGTCTGCTGGGAGAAAAAGGGACAATCGCCTTGGAACGGATGATGGGCATGGTGCTCATCATGATTTC CGTCCAGATGTTTATGAACGGCCTCGCCGGCTACGGCGTCAAATAG
Upstream 100 bases:
>100_bases GCGCTGGTGAAGAAAATAGCAATCCGGGCAGAGAAAATTTCCACTGCTGGCGGTTCCCTTTGACGTACACGCCCGTATCG TTTACAACGGGGCATATCCC
Downstream 100 bases:
>100_bases AAAGACGGTTCCGACCATGCTTTGGCTTCTGCACGGCAATCTGGGTTCTCCGGCGGATTGGAAACCCGTCATGGATTTTC TTCGTGCCGGAGGAGTGGAG
Product: multiple antibiotic resistance (MarC)-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MQDFLSTVILLFIVIDPVGLAPMIQGMLKKYSPAQQKAILTRELVFALSLLLLFFFSGKFLLNLLGLEPSTLSISGGILL FLVALGMVFPAKDMLSSSGRADGKDEPFIVPIAMPLMAGPSSLSIIMLHASQTPDSISQMTYAGAIVTAWFLSGMVLFIA QKFLRLLGEKGTIALERMMGMVLIMISVQMFMNGLAGYGVK
Sequences:
>Translated_201_residues MQDFLSTVILLFIVIDPVGLAPMIQGMLKKYSPAQQKAILTRELVFALSLLLLFFFSGKFLLNLLGLEPSTLSISGGILL FLVALGMVFPAKDMLSSSGRADGKDEPFIVPIAMPLMAGPSSLSIIMLHASQTPDSISQMTYAGAIVTAWFLSGMVLFIA QKFLRLLGEKGTIALERMMGMVLIMISVQMFMNGLAGYGVK >Mature_201_residues MQDFLSTVILLFIVIDPVGLAPMIQGMLKKYSPAQQKAILTRELVFALSLLLLFFFSGKFLLNLLGLEPSTLSISGGILL FLVALGMVFPAKDMLSSSGRADGKDEPFIVPIAMPLMAGPSSLSIIMLHASQTPDSISQMTYAGAIVTAWFLSGMVLFIA QKFLRLLGEKGTIALERMMGMVLIMISVQMFMNGLAGYGVK
Specific function: Unknown
COG id: COG2095
COG function: function code U; Multiple antibiotic transporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0056 (marC) family [H]
Homologues:
Organism=Escherichia coli, GI1789842, Length=198, Percent_Identity=42.9292929292929, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1787809, Length=197, Percent_Identity=24.3654822335025, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787494, Length=193, Percent_Identity=27.4611398963731, Blast_Score=66, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002771 [H]
Pfam domain/function: PF01914 MarC [H]
EC number: NA
Molecular weight: Translated: 21730; Mature: 21730
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 8.0 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 8.0 %Met (Mature Protein) 8.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDFLSTVILLFIVIDPVGLAPMIQGMLKKYSPAQQKAILTRELVFALSLLLLFFFSGKF CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLNLLGLEPSTLSISGGILLFLVALGMVFPAKDMLSSSGRADGKDEPFIVPIAMPLMAGP HHHHHCCCCCCEEECCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCEEEEEHHHHHCCC SSLSIIMLHASQTPDSISQMTYAGAIVTAWFLSGMVLFIAQKFLRLLGEKGTIALERMMG CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH MVLIMISVQMFMNGLAGYGVK HHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQDFLSTVILLFIVIDPVGLAPMIQGMLKKYSPAQQKAILTRELVFALSLLLLFFFSGKF CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLNLLGLEPSTLSISGGILLFLVALGMVFPAKDMLSSSGRADGKDEPFIVPIAMPLMAGP HHHHHCCCCCCEEECCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCEEEEEHHHHHCCC SSLSIIMLHASQTPDSISQMTYAGAIVTAWFLSGMVLFIAQKFLRLLGEKGTIALERMMG CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH MVLIMISVQMFMNGLAGYGVK HHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12522265 [H]