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The map label for this gene is rbfA

Identifier: 187735456

GI number: 187735456

Start: 1139421

End: 1139798

Strand: Reverse

Name: rbfA

Synonym: Amuc_0955

Alternate gene names: 187735456

Gene position: 1139798-1139421 (Counterclockwise)

Preceding gene: 187735457

Following gene: 187735452

Centisome position: 42.78

GC content: 57.94

Gene sequence:

>378_bases
ATGAGCAGACGCACTGACAAGGTAAACGAACTCCTGCGCCGGGAAATAGGCACCACCATTCAGCGGGATTTTGAATTTCC
CGGAACAATCGTCACCGTGATTGAAGTGGAAGTGACGGACGATCTGAAAGAGGGGAAAGTATGGGTGGGCGTCGTAGGGA
AAATGGCTCCCTCCCAGGTGCTGGAAAAACTGAACTCCCGTCACGGCCTTATCCAGTCCGCCGTGGCCAGGCGCGTGGTG
CTGCGCAATACGCCGCGCCTGACCTTCCGTCTGGACGACTCCGCCCAGCGCGGCGTTGACCTGGTCAACCTTCTGGAAGA
CATTGACAAGAACCTGCCCAAAGCCCCCCCTGCCGATGCGGAAAATGACGGGGAGTAA

Upstream 100 bases:

>100_bases
CGCTCCTCCGGGCGTCCGGGAAACCTCCGTCCCTGTCCTTTCCCTTATTCCTCCTTCTCCGATTGAACCAATCGGTCCCT
TCATCACTCTATCCCTTCAT

Downstream 100 bases:

>100_bases
TATTCTTCCCCTGGCTAAGGCACGGTGTCCCCGGCCGTACCGCGCTGGATGCGCCGGGACAGCGGAGGGCCGGAACACGC
AGAATCACGCTTCCGGAAAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSRRTDKVNELLRREIGTTIQRDFEFPGTIVTVIEVEVTDDLKEGKVWVGVVGKMAPSQVLEKLNSRHGLIQSAVARRVV
LRNTPRLTFRLDDSAQRGVDLVNLLEDIDKNLPKAPPADAENDGE

Sequences:

>Translated_125_residues
MSRRTDKVNELLRREIGTTIQRDFEFPGTIVTVIEVEVTDDLKEGKVWVGVVGKMAPSQVLEKLNSRHGLIQSAVARRVV
LRNTPRLTFRLDDSAQRGVDLVNLLEDIDKNLPKAPPADAENDGE
>Mature_124_residues
SRRTDKVNELLRREIGTTIQRDFEFPGTIVTVIEVEVTDDLKEGKVWVGVVGKMAPSQVLEKLNSRHGLIQSAVARRVVL
RNTPRLTFRLDDSAQRGVDLVNLLEDIDKNLPKAPPADAENDGE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_AKKM8 (B2UQQ2)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001877568.1
- GeneID:   6274208
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_0955
- HOGENOM:   HBG751055
- OMA:   YEVGRRI
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13989; Mature: 13858

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRTDKVNELLRREIGTTIQRDFEFPGTIVTVIEVEVTDDLKEGKVWVGVVGKMAPSQV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCHHHH
LEKLNSRHGLIQSAVARRVVLRNTPRLTFRLDDSAQRGVDLVNLLEDIDKNLPKAPPADA
HHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCC
ENDGE
CCCCC
>Mature Secondary Structure 
SRRTDKVNELLRREIGTTIQRDFEFPGTIVTVIEVEVTDDLKEGKVWVGVVGKMAPSQV
CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCHHHH
LEKLNSRHGLIQSAVARRVVLRNTPRLTFRLDDSAQRGVDLVNLLEDIDKNLPKAPPADA
HHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCC
ENDGE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA