Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735421
Identifier: 187735421
GI number: 187735421
Start: 1099438
End: 1100859
Strand: Direct
Name: 187735421
Synonym: Amuc_0920
Alternate gene names: NA
Gene position: 1099438-1100859 (Clockwise)
Preceding gene: 187735417
Following gene: 187735425
Centisome position: 41.27
GC content: 58.09
Gene sequence:
>1422_bases ATGTCTATTTTCTCATCACGCAGACAATTTCTCAAATCTTTGGGGCTTGCGGCCGGAGCGGCTGCCGCCGGAAATGCCCT CCCTGGGAAGGCTGTGGAAATCCCTGCCGGAGACCATCTCTGGAAATCCGCCTCTCCGGCGGCTCCGAGGCCTTCCGGTT CCACATACATGGGAGGGTTCAAGGCTCCCCGGCTGGGTCGCATCAGGCTGGCCTTCATCGGCGTGGGAGGGCGCGGGTTC TCCCACCTGGCGCAAATGTGCGTGATGGATGGAGTGGAAATCGTGGGCATATGTGATTTGAAGGAAGAGTTGACGAAACG CGGCGTGGATCGCGTGCTCTCCAGAATGGGGAAAAGCCCTTTGGGCTATTCCGGCGGCGATATGGAATACCTGACCATGC TGAAGGAGCTGAAGCCGGATGCCGTCATCATCAGTACGGATTGGAGTTCGCATGCCAGAATCGCCTGCGACAGCATGAAG CACGGCGCTCACGCCTTTGTGGAAGTTCCTCTGGCCGTCTCTCTGGAGGAGCTCTGGAGCCTGGTGGATACCAGCGAGGC CACCAGGAAACATTGCATGATGATGGAAAACGTCAACTATGGGCGGGATGAACTCATGTTCCTGAACATGGTCCGGCAGG GCGTCATCGGCGATTTGCTTCACGGGGAGGCCGCGTATATCCATTGCCTGGTGACGCAGCTGGGGGACACGCGCGGGGAA GGGGCCTGGCGGCCGGAATATCATACCAGAATCAATGGCAACCTGTACCCCACCCACGGGTTGGGGCCGGTGGCTCAATA TATGAATTTGGAGCGTGGAGAGGACCGTTTCTGCCGTGTGGCGGCGTTCGCTTCTCCTGCTCTCGGGCGCAATGCCTACG CTAAAAAGCATCTTCCCGCCGATCACCGCTGGAACAATACTCCATTCATCTGCGGTGACATGAATACGGCTGTTGTCAAG ACGCAGCTGGGGCGGACCATTCTTGTCCAGCTGGATGAGACGTCCCCCCGGCCTTACTCCCGCGCCAACCTGATCCAGGG AACGGAGGGCACGCTGGCTGGTTTCCCAACCCGCGTGGCGGGTGAAAAGCTGGGCAACGGCAATTATCATGAATGGATTG AAGGCAGGGAAAAACTGGCCGCTATTTATGAAAAATACGATCATCCCCTCTGGAAACGCATCGGGGAGCTGGCCACGAAA ATGGGCGGTCACGGCGGTATGGACTTTGTGATGCTTTCCCGCATCGTGGAATGCCTCCGGAACGGAGAACCAATGGATCA GAACGTTTACGAAGGAGCTTCCTGGTCTTCCCTGCTGCCGTTGACAGCCCGTTCCATCGCCCAGGGCGGGATGCCTGTGG AATTTCCGGATTTTACCCGCGGAGACTGGAAAACCACCATGCCGCTGGCCGTGGTTTCATGA
Upstream 100 bases:
>100_bases CTAAAATCAGCCATCCGGAGCTTTTCCCCTCAATAGGGAGAATGATGATAAATTCACTCCGGAGGGGGCGTAGTTTTCCT TGAAGCCATACTTTCAAGCC
Downstream 100 bases:
>100_bases ATAACGCCGGGGATGAAGGGGCGCTGCCCTCTTCCGGAGAGTTCAGGAAAGAATCCGTTCTTACGCAGGGTGCTCAGCAA GGACTGCCGGAAAACAGATT
Product: oxidoreductase domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MSIFSSRRQFLKSLGLAAGAAAAGNALPGKAVEIPAGDHLWKSASPAAPRPSGSTYMGGFKAPRLGRIRLAFIGVGGRGF SHLAQMCVMDGVEIVGICDLKEELTKRGVDRVLSRMGKSPLGYSGGDMEYLTMLKELKPDAVIISTDWSSHARIACDSMK HGAHAFVEVPLAVSLEELWSLVDTSEATRKHCMMMENVNYGRDELMFLNMVRQGVIGDLLHGEAAYIHCLVTQLGDTRGE GAWRPEYHTRINGNLYPTHGLGPVAQYMNLERGEDRFCRVAAFASPALGRNAYAKKHLPADHRWNNTPFICGDMNTAVVK TQLGRTILVQLDETSPRPYSRANLIQGTEGTLAGFPTRVAGEKLGNGNYHEWIEGREKLAAIYEKYDHPLWKRIGELATK MGGHGGMDFVMLSRIVECLRNGEPMDQNVYEGASWSSLLPLTARSIAQGGMPVEFPDFTRGDWKTTMPLAVVS
Sequences:
>Translated_473_residues MSIFSSRRQFLKSLGLAAGAAAAGNALPGKAVEIPAGDHLWKSASPAAPRPSGSTYMGGFKAPRLGRIRLAFIGVGGRGF SHLAQMCVMDGVEIVGICDLKEELTKRGVDRVLSRMGKSPLGYSGGDMEYLTMLKELKPDAVIISTDWSSHARIACDSMK HGAHAFVEVPLAVSLEELWSLVDTSEATRKHCMMMENVNYGRDELMFLNMVRQGVIGDLLHGEAAYIHCLVTQLGDTRGE GAWRPEYHTRINGNLYPTHGLGPVAQYMNLERGEDRFCRVAAFASPALGRNAYAKKHLPADHRWNNTPFICGDMNTAVVK TQLGRTILVQLDETSPRPYSRANLIQGTEGTLAGFPTRVAGEKLGNGNYHEWIEGREKLAAIYEKYDHPLWKRIGELATK MGGHGGMDFVMLSRIVECLRNGEPMDQNVYEGASWSSLLPLTARSIAQGGMPVEFPDFTRGDWKTTMPLAVVS >Mature_472_residues SIFSSRRQFLKSLGLAAGAAAAGNALPGKAVEIPAGDHLWKSASPAAPRPSGSTYMGGFKAPRLGRIRLAFIGVGGRGFS HLAQMCVMDGVEIVGICDLKEELTKRGVDRVLSRMGKSPLGYSGGDMEYLTMLKELKPDAVIISTDWSSHARIACDSMKH GAHAFVEVPLAVSLEELWSLVDTSEATRKHCMMMENVNYGRDELMFLNMVRQGVIGDLLHGEAAYIHCLVTQLGDTRGEG AWRPEYHTRINGNLYPTHGLGPVAQYMNLERGEDRFCRVAAFASPALGRNAYAKKHLPADHRWNNTPFICGDMNTAVVKT QLGRTILVQLDETSPRPYSRANLIQGTEGTLAGFPTRVAGEKLGNGNYHEWIEGREKLAAIYEKYDHPLWKRIGELATKM GGHGGMDFVMLSRIVECLRNGEPMDQNVYEGASWSSLLPLTARSIAQGGMPVEFPDFTRGDWKTTMPLAVVS
Specific function: Glycosidase
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): G1092_AKKM8 (B2UQL7)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001877533.1 - ProteinModelPortal: B2UQL7 - SMR: B2UQL7 - GeneID: 6274245 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_0920 - HOGENOM: HBG611861 - OMA: CITELSE - ProtClustDB: CLSK901939 - GO: GO:0005488 - InterPro: IPR016040 - InterPro: IPR000683 - InterPro: IPR006311 - Gene3D: G3DSA:3.40.50.720 - TIGRFAMs: TIGR01409
Pfam domain/function: PF01408 GFO_IDH_MocA
EC number: NA
Molecular weight: Translated: 51826; Mature: 51695
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: PS51318 TAT
Important sites: BINDING 99-99 BINDING 197-197 BINDING 226-226 BINDING 244-244 BINDING 256-256 BINDING 339-339
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFSSRRQFLKSLGLAAGAAAAGNALPGKAVEIPAGDHLWKSASPAAPRPSGSTYMGGF CCCHHHHHHHHHHHCCHHCCHHCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCC KAPRLGRIRLAFIGVGGRGFSHLAQMCVMDGVEIVGICDLKEELTKRGVDRVLSRMGKSP CCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCC LGYSGGDMEYLTMLKELKPDAVIISTDWSSHARIACDSMKHGAHAFVEVPLAVSLEELWS CCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHHCCCCEEEEECCHHCCHHHHHH LVDTSEATRKHCMMMENVNYGRDELMFLNMVRQGVIGDLLHGEAAYIHCLVTQLGDTRGE HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC GAWRPEYHTRINGNLYPTHGLGPVAQYMNLERGEDRFCRVAAFASPALGRNAYAKKHLPA CCCCCCCCEEECCEECCCCCCCHHHHHHCCCCCCCHHEEHHHHHCCCCCCCCHHHCCCCC DHRWNNTPFICGDMNTAVVKTQLGRTILVQLDETSPRPYSRANLIQGTEGTLAGFPTRVA CCCCCCCCEEECCCCHHHHHHHCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCHHH GEKLGNGNYHEWIEGREKLAAIYEKYDHPLWKRIGELATKMGGHGGMDFVMLSRIVECLR HHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH NGEPMDQNVYEGASWSSLLPLTARSIAQGGMPVEFPDFTRGDWKTTMPLAVVS CCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECC >Mature Secondary Structure SIFSSRRQFLKSLGLAAGAAAAGNALPGKAVEIPAGDHLWKSASPAAPRPSGSTYMGGF CCHHHHHHHHHHHCCHHCCHHCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCC KAPRLGRIRLAFIGVGGRGFSHLAQMCVMDGVEIVGICDLKEELTKRGVDRVLSRMGKSP CCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCC LGYSGGDMEYLTMLKELKPDAVIISTDWSSHARIACDSMKHGAHAFVEVPLAVSLEELWS CCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHHCCCCEEEEECCHHCCHHHHHH LVDTSEATRKHCMMMENVNYGRDELMFLNMVRQGVIGDLLHGEAAYIHCLVTQLGDTRGE HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC GAWRPEYHTRINGNLYPTHGLGPVAQYMNLERGEDRFCRVAAFASPALGRNAYAKKHLPA CCCCCCCCEEECCEECCCCCCCHHHHHHCCCCCCCHHEEHHHHHCCCCCCCCHHHCCCCC DHRWNNTPFICGDMNTAVVKTQLGRTILVQLDETSPRPYSRANLIQGTEGTLAGFPTRVA CCCCCCCCEEECCCCHHHHHHHCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCHHH GEKLGNGNYHEWIEGREKLAAIYEKYDHPLWKRIGELATKMGGHGGMDFVMLSRIVECLR HHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH NGEPMDQNVYEGASWSSLLPLTARSIAQGGMPVEFPDFTRGDWKTTMPLAVVS CCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA