Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is gpmA [H]
Identifier: 187735276
GI number: 187735276
Start: 908842
End: 910647
Strand: Direct
Name: gpmA [H]
Synonym: Amuc_0772
Alternate gene names: 187735276
Gene position: 908842-910647 (Clockwise)
Preceding gene: 187735274
Following gene: 187735277
Centisome position: 34.11
GC content: 52.44
Gene sequence:
>1806_bases ATGAAAACAATTGTTCTTCTTCGCCATGGAGAAAGCACGTGGAACCGTGAAAACAGATTCACCGGATGGACGGACGTGGA TCTGACGGAATTGGGAATACAGGAAGCCAACCACGCGGGCGACCTTCTGAAAGACAGGGGAATGGCCTTTGACCATGCCT ACACCTCTTATCTCAAGAGGGCCGTGAAAACGCTCAACTGCGTGCTGGACCATTTGGACCAGGACTGGCTGCCCGTCTCC AAAAGCTGGAGGTTGAATGAAAAGCACTACGGCATGCTCCAGGGCCTGAATAAAAGTGAAACGGCTCAAAAATACGGAGA CGAACAGGTACTGATCTGGAGGCGCAGTTATGACGTGGCGCCTCCTCCCCTGGCGGAGGACGATCCCGCCAACCCCAAAT GGGATCCCCGCTACAAGGGAGTGCCGGACAGCGAACTTCCGCGAACGGAATCACTGAAAGAAACTATTGCCCGCATGATG CCCTACTGGGAAGGAACAGTTCTCCCTTCTCTACGGACGCTGGACAATATCCTAATCGTAGCCCACGGCAACACATTGCG GGGCATGATCAAGTATTTGAAAAACATTCCTGACGAACAGCTGCTTTCCCTTAATCTTCCTACCGCCACCCCCTATGTAT TTGAATTTGACGACTCCCTAAACCTGGAAAAAGACTACTTTCTTGGGGATCCGGAAGAAATCCGCAAACGCATGGCGGCC GTCGCCGGCCAGGGAAGCGCAAAGAAAAAAAACGCCTGCGGAATAACCTCATTATCCTTTCCTATGACCGCCCATTCCTG CCGCATTGCGTTCTTTGACGCCAAGCCCTACGACCGGGATTCCTTCAATTCTGTCAATGAACGCGAATTCCATTACGACA TCCGTTACTTCAAAGGGCACCTCACTCCGGACAGCGTGCCCCTGACCCGCGGTACGGACGTAGCGTGCATTTTCGTCAAT GACACGGCAAACCGGGAAGTAATACGGAACCTGAAGGAAAATGGCGTCAAATTGCTGGCTCTGCGTTGCGCCGGATTCAA TAATGTGGATCTGAAAGCTGCGGAAGAAGCGGAACTGCCCGTCGTGCGGGTGCCCCAATATTCTCCCTATGCGGTGGCGG AACATGCCGTAGCCCTGATGCTTTCCCTGAACCGCAAAATACACCGCGCCTACTGGCGCACCAGGGACGGCAATTTTTCC CTTCACGGCCTGATGGGCTTTGACATGAATGGAAAAACGGCCGGCATCATCGGAACGGGAAAAATCGCCAGAATCCTCAT CCGCATTCTCAAAGGCTTCGGGATGAACATCCTGGCCTATGACCTGCACCCTGACCAGCGCTTTGCGGAAGAAGCCGGCA TTACGTACACCACCCTGGACGATCTGTACGCCCGGTCCGATATCATCTCCCTGCACTGTCCCCTTACTCCGGAAACGGAA CACCTGATTAATACGGATTCCATTGGAAAAATGAAGGATGGAGTGATGATCATCAACACGGGACGCGGCAAGCTGATTAA CACGGAAATGCTGATTGACGGCCTGAAATCAAAAAAAGTGGGAGCTGCCGGACTGGACGTGTACGAAGAAGAGGGAGAAT ATTTCTACGAAGACAAATCCGACAGGATTATTGATGATGATACTCTGGCTCGTCTCCTTTCCTTCAACAACGTCATCCTG ACTTCCCACCAGGGCTTTTTCACGAAAGAAGCCCTGCACAATATTGCGGAAGTCACCCTGCACAACATCCGGGACTTTCT GGAAAGCAAACCTCTGATCAACCGAGTCTCGCTTCAGTCACGCTGA
Upstream 100 bases:
>100_bases CGGACGGAACGGAGGCCTTCCGTTCCGTGGAATGTGATCATGTCATATATCTTCATCCCTTTGTATGAAAACCGGAGGAC GCCTGTCTAAATTGATCAAT
Downstream 100 bases:
>100_bases ACGTGCCCGGCGGGCGCTCTACGGAAATCCGGGACTTTCTCATCCGCCTTCTGCCGGACAGAAGGCGGAATTCGGGGAAA GGCGGCAGCTTTTTTATGCA
Product: phosphoglycerate mutase 1 family
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM [H]
Number of amino acids: Translated: 601; Mature: 601
Protein sequence:
>601_residues MKTIVLLRHGESTWNRENRFTGWTDVDLTELGIQEANHAGDLLKDRGMAFDHAYTSYLKRAVKTLNCVLDHLDQDWLPVS KSWRLNEKHYGMLQGLNKSETAQKYGDEQVLIWRRSYDVAPPPLAEDDPANPKWDPRYKGVPDSELPRTESLKETIARMM PYWEGTVLPSLRTLDNILIVAHGNTLRGMIKYLKNIPDEQLLSLNLPTATPYVFEFDDSLNLEKDYFLGDPEEIRKRMAA VAGQGSAKKKNACGITSLSFPMTAHSCRIAFFDAKPYDRDSFNSVNEREFHYDIRYFKGHLTPDSVPLTRGTDVACIFVN DTANREVIRNLKENGVKLLALRCAGFNNVDLKAAEEAELPVVRVPQYSPYAVAEHAVALMLSLNRKIHRAYWRTRDGNFS LHGLMGFDMNGKTAGIIGTGKIARILIRILKGFGMNILAYDLHPDQRFAEEAGITYTTLDDLYARSDIISLHCPLTPETE HLINTDSIGKMKDGVMIINTGRGKLINTEMLIDGLKSKKVGAAGLDVYEEEGEYFYEDKSDRIIDDDTLARLLSFNNVIL TSHQGFFTKEALHNIAEVTLHNIRDFLESKPLINRVSLQSR
Sequences:
>Translated_601_residues MKTIVLLRHGESTWNRENRFTGWTDVDLTELGIQEANHAGDLLKDRGMAFDHAYTSYLKRAVKTLNCVLDHLDQDWLPVS KSWRLNEKHYGMLQGLNKSETAQKYGDEQVLIWRRSYDVAPPPLAEDDPANPKWDPRYKGVPDSELPRTESLKETIARMM PYWEGTVLPSLRTLDNILIVAHGNTLRGMIKYLKNIPDEQLLSLNLPTATPYVFEFDDSLNLEKDYFLGDPEEIRKRMAA VAGQGSAKKKNACGITSLSFPMTAHSCRIAFFDAKPYDRDSFNSVNEREFHYDIRYFKGHLTPDSVPLTRGTDVACIFVN DTANREVIRNLKENGVKLLALRCAGFNNVDLKAAEEAELPVVRVPQYSPYAVAEHAVALMLSLNRKIHRAYWRTRDGNFS LHGLMGFDMNGKTAGIIGTGKIARILIRILKGFGMNILAYDLHPDQRFAEEAGITYTTLDDLYARSDIISLHCPLTPETE HLINTDSIGKMKDGVMIINTGRGKLINTEMLIDGLKSKKVGAAGLDVYEEEGEYFYEDKSDRIIDDDTLARLLSFNNVIL TSHQGFFTKEALHNIAEVTLHNIRDFLESKPLINRVSLQSR >Mature_601_residues MKTIVLLRHGESTWNRENRFTGWTDVDLTELGIQEANHAGDLLKDRGMAFDHAYTSYLKRAVKTLNCVLDHLDQDWLPVS KSWRLNEKHYGMLQGLNKSETAQKYGDEQVLIWRRSYDVAPPPLAEDDPANPKWDPRYKGVPDSELPRTESLKETIARMM PYWEGTVLPSLRTLDNILIVAHGNTLRGMIKYLKNIPDEQLLSLNLPTATPYVFEFDDSLNLEKDYFLGDPEEIRKRMAA VAGQGSAKKKNACGITSLSFPMTAHSCRIAFFDAKPYDRDSFNSVNEREFHYDIRYFKGHLTPDSVPLTRGTDVACIFVN DTANREVIRNLKENGVKLLALRCAGFNNVDLKAAEEAELPVVRVPQYSPYAVAEHAVALMLSLNRKIHRAYWRTRDGNFS LHGLMGFDMNGKTAGIIGTGKIARILIRILKGFGMNILAYDLHPDQRFAEEAGITYTTLDDLYARSDIISLHCPLTPETE HLINTDSIGKMKDGVMIINTGRGKLINTEMLIDGLKSKKVGAAGLDVYEEEGEYFYEDKSDRIIDDDTLARLLSFNNVIL TSHQGFFTKEALHNIAEVTLHNIRDFLESKPLINRVSLQSR
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG1052
COG function: function code CHR; Lactate dehydrogenase and related dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily [H]
Homologues:
Organism=Homo sapiens, GI50593010, Length=248, Percent_Identity=52.0161290322581, Blast_Score=273, Evalue=3e-73, Organism=Homo sapiens, GI4505753, Length=249, Percent_Identity=52.6104417670683, Blast_Score=258, Evalue=1e-68, Organism=Homo sapiens, GI71274132, Length=249, Percent_Identity=50.2008032128514, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI4502445, Length=251, Percent_Identity=43.8247011952191, Blast_Score=226, Evalue=4e-59, Organism=Homo sapiens, GI40353764, Length=251, Percent_Identity=43.8247011952191, Blast_Score=226, Evalue=4e-59, Organism=Homo sapiens, GI310129614, Length=160, Percent_Identity=56.875, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI23308577, Length=256, Percent_Identity=30.46875, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI61743967, Length=278, Percent_Identity=27.6978417266187, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI4557497, Length=278, Percent_Identity=27.6978417266187, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI145580575, Length=284, Percent_Identity=26.7605633802817, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI145580578, Length=284, Percent_Identity=26.7605633802817, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI4557499, Length=284, Percent_Identity=26.7605633802817, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI6912396, Length=285, Percent_Identity=27.3684210526316, Blast_Score=105, Evalue=9e-23, Organism=Escherichia coli, GI1787645, Length=319, Percent_Identity=52.3510971786834, Blast_Score=352, Evalue=5e-98, Organism=Escherichia coli, GI1786970, Length=245, Percent_Identity=58.3673469387755, Blast_Score=300, Evalue=2e-82, Organism=Escherichia coli, GI87082289, Length=251, Percent_Identity=32.6693227091633, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1789279, Length=242, Percent_Identity=32.2314049586777, Blast_Score=110, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17532191, Length=251, Percent_Identity=29.8804780876494, Blast_Score=125, Evalue=5e-29, Organism=Caenorhabditis elegans, GI25147481, Length=256, Percent_Identity=29.6875, Blast_Score=102, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6322697, Length=245, Percent_Identity=47.7551020408163, Blast_Score=234, Evalue=4e-62, Organism=Saccharomyces cerevisiae, GI6324055, Length=249, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=3e-32, Organism=Saccharomyces cerevisiae, GI6324516, Length=296, Percent_Identity=30.0675675675676, Blast_Score=134, Evalue=5e-32, Organism=Saccharomyces cerevisiae, GI6320183, Length=300, Percent_Identity=28.6666666666667, Blast_Score=129, Evalue=2e-30, Organism=Saccharomyces cerevisiae, GI6320925, Length=295, Percent_Identity=29.8305084745763, Blast_Score=127, Evalue=4e-30, Organism=Saccharomyces cerevisiae, GI6322116, Length=290, Percent_Identity=31.0344827586207, Blast_Score=126, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6324964, Length=213, Percent_Identity=28.6384976525822, Blast_Score=91, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6325144, Length=128, Percent_Identity=38.28125, Blast_Score=68, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324857, Length=191, Percent_Identity=24.0837696335079, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6321253, Length=178, Percent_Identity=28.0898876404494, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324980, Length=140, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24646216, Length=249, Percent_Identity=51.004016064257, Blast_Score=256, Evalue=3e-68, Organism=Drosophila melanogaster, GI85725270, Length=249, Percent_Identity=48.995983935743, Blast_Score=236, Evalue=3e-62, Organism=Drosophila melanogaster, GI85725272, Length=249, Percent_Identity=48.995983935743, Blast_Score=236, Evalue=3e-62, Organism=Drosophila melanogaster, GI24650981, Length=249, Percent_Identity=48.995983935743, Blast_Score=236, Evalue=3e-62, Organism=Drosophila melanogaster, GI28571815, Length=251, Percent_Identity=37.4501992031873, Blast_Score=173, Evalue=4e-43, Organism=Drosophila melanogaster, GI28571817, Length=251, Percent_Identity=37.4501992031873, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24648979, Length=251, Percent_Identity=37.4501992031873, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI19921140, Length=262, Percent_Identity=30.5343511450382, Blast_Score=128, Evalue=9e-30, Organism=Drosophila melanogaster, GI62472511, Length=271, Percent_Identity=32.4723247232472, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI24646446, Length=271, Percent_Identity=32.4723247232472, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI24646448, Length=271, Percent_Identity=32.4723247232472, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI24646452, Length=271, Percent_Identity=32.4723247232472, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI24646450, Length=271, Percent_Identity=32.4723247232472, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI45552429, Length=265, Percent_Identity=27.9245283018868, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI24585514, Length=265, Percent_Identity=27.9245283018868, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI28574282, Length=265, Percent_Identity=27.9245283018868, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI28574284, Length=265, Percent_Identity=27.9245283018868, Blast_Score=111, Evalue=2e-24, Organism=Drosophila melanogaster, GI45551003, Length=265, Percent_Identity=27.9245283018868, Blast_Score=111, Evalue=2e-24, Organism=Drosophila melanogaster, GI28574286, Length=264, Percent_Identity=27.2727272727273, Blast_Score=106, Evalue=4e-23, Organism=Drosophila melanogaster, GI28571528, Length=294, Percent_Identity=27.2108843537415, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI24585516, Length=265, Percent_Identity=24.5283018867925, Blast_Score=83, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 68089; Mature: 68089
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00670 D_2_HYDROXYACID_DH_2 ; PS00671 D_2_HYDROXYACID_DH_3 ; PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIVLLRHGESTWNRENRFTGWTDVDLTELGIQEANHAGDLLKDRGMAFDHAYTSYLKR CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH AVKTLNCVLDHLDQDWLPVSKSWRLNEKHYGMLQGLNKSETAQKYGDEQVLIWRRSYDVA HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCCCC PPPLAEDDPANPKWDPRYKGVPDSELPRTESLKETIARMMPYWEGTVLPSLRTLDNILIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCEEEE AHGNTLRGMIKYLKNIPDEQLLSLNLPTATPYVFEFDDSLNLEKDYFLGDPEEIRKRMAA ECCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH VAGQGSAKKKNACGITSLSFPMTAHSCRIAFFDAKPYDRDSFNSVNEREFHYDIRYFKGH HHCCCCCCCCCCCCEEEECCCCEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECC LTPDSVPLTRGTDVACIFVNDTANREVIRNLKENGVKLLALRCAGFNNVDLKAAEEAELP CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCC VVRVPQYSPYAVAEHAVALMLSLNRKIHRAYWRTRDGNFSLHGLMGFDMNGKTAGIIGTG EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEECH KIARILIRILKGFGMNILAYDLHPDQRFAEEAGITYTTLDDLYARSDIISLHCPLTPETE HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEHHHHHHCCCEEEEECCCCCCHH HLINTDSIGKMKDGVMIINTGRGKLINTEMLIDGLKSKKVGAAGLDVYEEEGEYFYEDKS HHCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHCHHCCCCCCCCCCEEECCCCEEEECCC DRIIDDDTLARLLSFNNVILTSHQGFFTKEALHNIAEVTLHNIRDFLESKPLINRVSLQS CCEECHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC R C >Mature Secondary Structure MKTIVLLRHGESTWNRENRFTGWTDVDLTELGIQEANHAGDLLKDRGMAFDHAYTSYLKR CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH AVKTLNCVLDHLDQDWLPVSKSWRLNEKHYGMLQGLNKSETAQKYGDEQVLIWRRSYDVA HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCCCC PPPLAEDDPANPKWDPRYKGVPDSELPRTESLKETIARMMPYWEGTVLPSLRTLDNILIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCEEEE AHGNTLRGMIKYLKNIPDEQLLSLNLPTATPYVFEFDDSLNLEKDYFLGDPEEIRKRMAA ECCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH VAGQGSAKKKNACGITSLSFPMTAHSCRIAFFDAKPYDRDSFNSVNEREFHYDIRYFKGH HHCCCCCCCCCCCCEEEECCCCEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECC LTPDSVPLTRGTDVACIFVNDTANREVIRNLKENGVKLLALRCAGFNNVDLKAAEEAELP CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCC VVRVPQYSPYAVAEHAVALMLSLNRKIHRAYWRTRDGNFSLHGLMGFDMNGKTAGIIGTG EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEECH KIARILIRILKGFGMNILAYDLHPDQRFAEEAGITYTTLDDLYARSDIISLHCPLTPETE HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEHHHHHHCCCEEEEECCCCCCHH HLINTDSIGKMKDGVMIINTGRGKLINTEMLIDGLKSKKVGAAGLDVYEEEGEYFYEDKS HHCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHCHHCCCCCCCCCCEEECCCCEEEECCC DRIIDDDTLARLLSFNNVILTSHQGFFTKEALHNIAEVTLHNIRDFLESKPLINRVSLQS CCEECHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA