Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is epsH [H]
Identifier: 187735259
GI number: 187735259
Start: 887433
End: 888458
Strand: Reverse
Name: epsH [H]
Synonym: Amuc_0754
Alternate gene names: 187735259
Gene position: 888458-887433 (Counterclockwise)
Preceding gene: 187735260
Following gene: 187735258
Centisome position: 33.35
GC content: 57.31
Gene sequence:
>1026_bases ATGACGGCTCCCGTAAACATTTCCGTGCTGGTTCCGGTTTACAATGTGGAGCCGTACCTGGCCCAGTGCCTGGAAAGCAT TTGCTCACAGACGCTCCGTGAGCTGGAAATAGTTTGCGTGGATGACGCTTCCACGGACGGTTCCCTGTCCATTCTGCGGG AATTCGCGGAGCGGGACCCGCGGGTGAAGGTCGTGCAGGCTCCGGAAAACGGCGGCTTATCCCGCTCCCGGAATCTGGCG ATGAGCCATGCTGTGGGAGAATATCTGTTTCTGGTGGATTCCGACGACTGGCTGGAAACGGATTTGCTGGAGGAGATGTA CCGCCGTGCGAAGGCGCTGGATGCCGACAGGCTGGCATGCGGGTTCCGGTATTATTACGAGTCCGCCCCGGACCGGGAGG ACCGGTTTCTGCCGGAGGACATGGCCCCTCCGGAAAAAGGGTGGCTTCCCTGCACTCCGGAGACCATTGGGAAAATACAT CATGGAGCGGGCGGCATGATGATCAGGCGTTCCATTGTGGAAAAGCATGGCATCCGGTTCCCCGAGGGCGTTGCCTGTGA AGACCTGTATTTCCATTACGCCGTTTTTCCATGGTGCAGGAGGGTTTGCGTCGTCAGCAGGGCGGCTTACGTTTACCGTA AGCGGGCCGGATCCATTACCAGCGGTTTTGCGTCCGGCAGTTCCCTCCAGTCGCTGGATTACCTGACGGTGGCGGAACTG GTGCTGAAGGAATGGAAAGAAGCCGGGATTCTTGAGGAATACAGGACGGCATTTTTGAAAATGCTGGTAATGGGCGTGAG GAACATCCGCAAATATGCCCCTCATGCCGTCCAAAAGGAGGTTACCCGGAAGGTGACTGATATGCTCCGTCAGGAAAATC TGTACCGTCCCGCAGAGGATGATGCCTGCCTGTCCCGCCGGGAAGGAAAATTACTGAAAGCCTGGATGGGCGGAAAATCC GGCTTGGACTTTTCCTATTACTGGAAGAAAATGCGCAAGGCGGGAGCCCGGTTGCTGCGCCGCTGA
Upstream 100 bases:
>100_bases AGGAAATTACAGTGGACCAGGTATGGTCCGCGCTGGAGCCCTTTCTGCCGCCGCAGGAAGGATTTGAACAAATAAGGGCG GCAGATTCTCCGCATGGCTC
Downstream 100 bases:
>100_bases CATCACCCGAATGAATAATCCGATGAAAAAGAATGAATTTGCCGTCGTCCTGGCCAGTGACAACAGGGGCATTCTACCTT TGAGCGTTACTGTCTTTTCT
Product: glycosyl transferase family 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MTAPVNISVLVPVYNVEPYLAQCLESICSQTLRELEIVCVDDASTDGSLSILREFAERDPRVKVVQAPENGGLSRSRNLA MSHAVGEYLFLVDSDDWLETDLLEEMYRRAKALDADRLACGFRYYYESAPDREDRFLPEDMAPPEKGWLPCTPETIGKIH HGAGGMMIRRSIVEKHGIRFPEGVACEDLYFHYAVFPWCRRVCVVSRAAYVYRKRAGSITSGFASGSSLQSLDYLTVAEL VLKEWKEAGILEEYRTAFLKMLVMGVRNIRKYAPHAVQKEVTRKVTDMLRQENLYRPAEDDACLSRREGKLLKAWMGGKS GLDFSYYWKKMRKAGARLLRR
Sequences:
>Translated_341_residues MTAPVNISVLVPVYNVEPYLAQCLESICSQTLRELEIVCVDDASTDGSLSILREFAERDPRVKVVQAPENGGLSRSRNLA MSHAVGEYLFLVDSDDWLETDLLEEMYRRAKALDADRLACGFRYYYESAPDREDRFLPEDMAPPEKGWLPCTPETIGKIH HGAGGMMIRRSIVEKHGIRFPEGVACEDLYFHYAVFPWCRRVCVVSRAAYVYRKRAGSITSGFASGSSLQSLDYLTVAEL VLKEWKEAGILEEYRTAFLKMLVMGVRNIRKYAPHAVQKEVTRKVTDMLRQENLYRPAEDDACLSRREGKLLKAWMGGKS GLDFSYYWKKMRKAGARLLRR >Mature_340_residues TAPVNISVLVPVYNVEPYLAQCLESICSQTLRELEIVCVDDASTDGSLSILREFAERDPRVKVVQAPENGGLSRSRNLAM SHAVGEYLFLVDSDDWLETDLLEEMYRRAKALDADRLACGFRYYYESAPDREDRFLPEDMAPPEKGWLPCTPETIGKIHH GAGGMMIRRSIVEKHGIRFPEGVACEDLYFHYAVFPWCRRVCVVSRAAYVYRKRAGSITSGFASGSSLQSLDYLTVAELV LKEWKEAGILEEYRTAFLKMLVMGVRNIRKYAPHAVQKEVTRKVTDMLRQENLYRPAEDDACLSRREGKLLKAWMGGKSG LDFSYYWKKMRKAGARLLRR
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790044, Length=196, Percent_Identity=28.0612244897959, Blast_Score=83, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 38904; Mature: 38773
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPVNISVLVPVYNVEPYLAQCLESICSQTLRELEIVCVDDASTDGSLSILREFAERDP CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHCCC RVKVVQAPENGGLSRSRNLAMSHAVGEYLFLVDSDDWLETDLLEEMYRRAKALDADRLAC CEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHH GFRYYYESAPDREDRFLPEDMAPPEKGWLPCTPETIGKIHHGAGGMMIRRSIVEKHGIRF HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCC PEGVACEDLYFHYAVFPWCRRVCVVSRAAYVYRKRAGSITSGFASGSSLQSLDYLTVAEL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHH VLKEWKEAGILEEYRTAFLKMLVMGVRNIRKYAPHAVQKEVTRKVTDMLRQENLYRPAED HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC DACLSRREGKLLKAWMGGKSGLDFSYYWKKMRKAGARLLRR HHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAPVNISVLVPVYNVEPYLAQCLESICSQTLRELEIVCVDDASTDGSLSILREFAERDP CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHCCC RVKVVQAPENGGLSRSRNLAMSHAVGEYLFLVDSDDWLETDLLEEMYRRAKALDADRLAC CEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHH GFRYYYESAPDREDRFLPEDMAPPEKGWLPCTPETIGKIHHGAGGMMIRRSIVEKHGIRF HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCC PEGVACEDLYFHYAVFPWCRRVCVVSRAAYVYRKRAGSITSGFASGSSLQSLDYLTVAEL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHH VLKEWKEAGILEEYRTAFLKMLVMGVRNIRKYAPHAVQKEVTRKVTDMLRQENLYRPAED HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC DACLSRREGKLLKAWMGGKSGLDFSYYWKKMRKAGARLLRR HHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]