| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is ygfF [H]
Identifier: 187733307
GI number: 187733307
Start: 3091896
End: 3092639
Strand: Reverse
Name: ygfF [H]
Synonym: SbBS512_E3323
Alternate gene names: 187733307
Gene position: 3092639-3091896 (Counterclockwise)
Preceding gene: 187730827
Following gene: 187732830
Centisome position: 67.0
GC content: 54.44
Gene sequence:
>744_bases ATGGCTATAGCACTTGTGACCGGTGGCAGTCGCGGCATCGGGCGGGCAACTGCATTACTGTTGGCGAAAGAAGAGTATAC GGTGGCGGTTAATTATCAACAAAACCTCCATGCGGCGCAGGAAGTGGTGAACTTAATCACGCAAGCCGGTGGCAAGGCAT TCGTGCTCCAGGCGGATATCAGCGACGAAAATCAGGTCATAGCAATGTTTACAGCAATCGATCAGCACGATGAACCGCTA GCAGCGCTGGTCAATAACGCCGGGATCTTGTTTACCCAGTGCACCGTTGAAAACCTTACCGCAGAGCGAATCAACCGAGT ACTTTCCACCAACGTGACGGGATATTTTCTCTGCTGCCGCGAGGCGGTAAAACGCATGGCGCTTAAAAATGGTGGCAGTG GCGGCGCTATCGTCAATGTCTCTTCGGTGGCCTCACGGTTGGGTTCGCCAGGGGAATATGTTGATTACGCGGCATCGAAA GGGGCGATTGATACGTTAACCACCGGACTATCGCTGGAAGTCGCCGCGCAGGGGATCCGCGTTAACTGCGTGCGGCCAGG GTTTATTTATACCGAAATGCACGCCAGCGGCGGCGAGCTTGGACGCGTCGATCGCGTTAAGTCGAACATCCCCATGCAGC GTGGTGGACAGGCAGAAGAGGTCGCGCAGGCCATTGTCTGGCTACTAAGTGATAAAGCCTCTTACGTCACGGGAAGTTTT ATCGATTTGGCGGGCGGGAAATAA
Upstream 100 bases:
>100_bases TGAAAGGGCGAGGGGAAAAGCGTGCCAACATTGAAGATTGAGCCAGTTTGTTAGCAATCTCAAAGATACGTCAACGAATT AATTTTTCTCGGAAAAACAA
Downstream 100 bases:
>100_bases AACAGGGAAGTTGTCTGACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGC AATCACCTCTTTGTACCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MAIALVTGGSRGIGRATALLLAKEEYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVIAMFTAIDQHDEPL AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASK GAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGELGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF IDLAGGK
Sequences:
>Translated_247_residues MAIALVTGGSRGIGRATALLLAKEEYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVIAMFTAIDQHDEPL AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASK GAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGELGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF IDLAGGK >Mature_246_residues AIALVTGGSRGIGRATALLLAKEEYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVIAMFTAIDQHDEPLA ALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKG AIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGELGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSFI DLAGGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=37.1428571428571, Blast_Score=132, Evalue=3e-31, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=33.596837944664, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=33.201581027668, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=31.8725099601594, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=31.1475409836066, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI59889578, Length=201, Percent_Identity=29.3532338308458, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=27.9352226720648, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI5031737, Length=258, Percent_Identity=31.0077519379845, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI31542939, Length=243, Percent_Identity=30.0411522633745, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=28.4584980237154, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=27.8884462151394, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI66933014, Length=175, Percent_Identity=32, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=32.258064516129, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=97.9757085020243, Blast_Score=493, Evalue=1e-141, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=34.9593495934959, Blast_Score=129, Evalue=1e-31, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=29.5081967213115, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=33.1967213114754, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=29.6296296296296, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=32.0675105485232, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=31.6, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=29.9610894941634, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=30.0411522633745, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI87082100, Length=247, Percent_Identity=28.7449392712551, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=28.7449392712551, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=27.2, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787891, Length=244, Percent_Identity=26.2295081967213, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=32.5490196078431, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=30.859375, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=34.0163934426229, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=33.4677419354839, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=32.5102880658436, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=32, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=31.496062992126, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=28.1481481481481, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17562910, Length=274, Percent_Identity=32.4817518248175, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=30.8880308880309, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=27.8195488721804, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=31.2741312741313, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=28.735632183908, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=31.9066147859922, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=31.1538461538462, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=28.4046692607004, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=30.7086614173228, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=29.9610894941634, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=27.8625954198473, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561272, Length=213, Percent_Identity=27.2300469483568, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=31.0861423220974, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=30.0380228136882, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=27.2388059701493, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=28.968253968254, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=30.1526717557252, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=29.4339622641509, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17564282, Length=247, Percent_Identity=28.3400809716599, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=28.957528957529, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=244, Percent_Identity=31.1475409836066, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=26.5873015873016, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=36.5758754863813, Blast_Score=121, Evalue=3e-28, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=36.4705882352941, Blast_Score=120, Evalue=8e-28, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=35.15625, Blast_Score=117, Evalue=7e-27, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=34.251968503937, Blast_Score=116, Evalue=1e-26, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=34.136546184739, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=33.0612244897959, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI24644337, Length=214, Percent_Identity=32.7102803738318, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=30.0395256916996, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI17737361, Length=238, Percent_Identity=33.1932773109244, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI116007236, Length=242, Percent_Identity=28.5123966942149, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24641232, Length=237, Percent_Identity=29.1139240506329, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24648944, Length=232, Percent_Identity=29.3103448275862, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26009; Mature: 25878
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIALVTGGSRGIGRATALLLAKEEYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADI CEEEEEECCCCCCCHHEEEEEEECCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECC SDENQVIAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCR CCCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHH EAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIR HHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCHHHHHCCCCCHHHHHCCCEEEEEECCEE VNCVRPGFIYTEMHASGGELGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF EEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE IDLAGGK EECCCCC >Mature Secondary Structure AIALVTGGSRGIGRATALLLAKEEYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADI EEEEEECCCCCCCHHEEEEEEECCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECC SDENQVIAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCR CCCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHH EAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIR HHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCHHHHHCCCCCHHHHHCCCEEEEEECCEE VNCVRPGFIYTEMHASGGELGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF EEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE IDLAGGK EECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]