Click here to switch to the map view.

The map label for this gene is exbD

Identifier: 187732902

GI number: 187732902

Start: 3193375

End: 3193800

Strand: Reverse

Name: exbD

Synonym: SbBS512_E3433

Alternate gene names: 187732902

Gene position: 3193800-3193375 (Counterclockwise)

Preceding gene: 187730205

Following gene: 187732008

Centisome position: 69.19

GC content: 50.0

Gene sequence:

>426_bases
ATGGCAATGCATCTTAACGAAAACCTCGACGATAACGGCGAAATGCATGATATCAACGTGACGCCGTTTATCGACGTGAT
GTTGGTTCTGCTGATTATCTTTATGGTGGCGGCACCGTTAGCGACGGTAGATGTGAAGGTGAACTTGCCTGCTTCTACCA
GCACGCCGCAGCCGCGCCCGGAAAAACCGGTTTATCTGTCGGTGAAGGCAGACAACTCGATGTTTATCGGTAACGATCCG
GTCACCGATGAAACAATGATTACGGCGTTGAATGCGTTAACCGAAGGCAAGAAAGACACCACCATCTTCTTCCGAGCGGA
TAAAACCGTCGATTACGAGACGTTGATGAAGGTAATGGATACGCTGCATCAGGCGGGTTACCTGAAGATAGGTCTGGTCG
GCGAAGAAACCGCCAAAGCGAAGTAA

Upstream 100 bases:

>100_bases
GCAGGTATTGTTGCTGCAAAGCCGTGACCTGGATCTGGAAGCCAGCGCCGCTGCGCATCCGGTTCGTGTCGCACAAAAAT
TACGCGCAGGATAATATCCG

Downstream 100 bases:

>100_bases
AGTAGAATTGCCTGATGCGCTACGCTCATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGC
GGATAAGGCGTTTTCGCCAC

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDP
VTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK

Sequences:

>Translated_141_residues
MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDP
VTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK
>Mature_140_residues
AMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPV
TDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=100, Blast_Score=286, Evalue=5e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EXBD_ECO57 (P0ABV4)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A85960
- PIR:   A98115
- RefSeq:   NP_289582.1
- RefSeq:   NP_311916.1
- ProteinModelPortal:   P0ABV4
- SMR:   P0ABV4
- EnsemblBacteria:   EBESCT00000028301
- EnsemblBacteria:   EBESCT00000058818
- GeneID:   916285
- GeneID:   958487
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4358
- KEGG:   ecs:ECs3889
- GeneTree:   EBGT00050000009885
- HOGENOM:   HBG729503
- OMA:   DLNHEIN
- ProtClustDB:   PRK11267
- BioCyc:   ECOL83334:ECS3889-MONOMER
- InterPro:   IPR003400
- InterPro:   IPR014170
- TIGRFAMs:   TIGR02803

Pfam domain/function: PF02472 ExbD

EC number: NA

Molecular weight: Translated: 15527; Mature: 15396

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2055c62c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
CEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMD
CCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
TLHQAGYLKIGLVGEETAKAK
HHHHCCCEEEEEECCCCCCCH
>Mature Secondary Structure 
AMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
EECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMD
CCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
TLHQAGYLKIGLVGEETAKAK
HHHHCCCEEEEEECCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796