Click here to switch to the map view.

The map label for this gene is ygiD [H]

Identifier: 187732046

GI number: 187732046

Start: 3226431

End: 3227246

Strand: Reverse

Name: ygiD [H]

Synonym: SbBS512_E3471

Alternate gene names: 187732046

Gene position: 3227246-3226431 (Counterclockwise)

Preceding gene: 187733542

Following gene: 187730846

Centisome position: 69.91

GC content: 53.55

Gene sequence:

>816_bases
ATGACACCCTTAGTTAAGGATATCATCATGTCTTCAACACGTATGCCAGCATTGTTTTTAGGTCACGGTAGTCCGATGAA
CGTGCTGGAAGATAATTTGTATACCCGCAGCTGGCAGAAGTTGGGGATGACATTGCCACGCCCGCAAGCGATTGTGGTGG
TTTCGGCTCACTGGTTTACCCGTGGAACAGGAGTGACCGCGATGGAGACGCCGCCCACGATTCATGACTTTGGTGGCTTC
CCGCAGGCGCTGTACGATACGCATTATCCTGCTCCGGGTTCGCCTGTGCTGGCACAGCATCTGGTTGAGCTGTTAGCGCC
GGTCCCGGTGACGCTGGATAAAGAAGCCTGGGGCTTTGACCACGGTTCCTGGGGCGTGCTGATTAAGATGTATCCTGACG
CCGATATCCCGATGGTGCAGTTGAGTATCGACAGTAGCAAACCTGCCGCCTGGCATTTCGAAATGGGGCGCAAACTGGCA
GCGCTGCGAGATGAAGGAATAATGTTGGTCGCCAGTGGCAACGTGGTGCATAACCTGCGTACAGTGAAGTGGCACGGTGA
TAGTTCATCATATCCTTGGGCGATGTCGTTTAATGAGTATGTGAAAGCGAATCTGACGTGGCAAGGGGCGGTAGAGCAGC
ATCCTCTGGTGAATTACCTCGACCATGAAGGTGGCGCGTTATCGAACCCAACGCCGGAGCACTATCTGCCGTTGTTGTAT
GTCTTAGGTGCGTGGGATGGGCAGGAGCCAATTACCATTCCGGTCGATGGTATAGAAATGGGCAGCCTGAGTATGCTGTC
GGTGCAGATAGGTTAA

Upstream 100 bases:

>100_bases
AATCTTCACCTTCAGGCAGATCGTCAAAATAACTGATGATCATCATCATTGTTATCCGGGTTCTTACTCCGCCGAACAAG
CGTATTGTGAGGATATCAAA

Downstream 100 bases:

>100_bases
CAATTACCGGATGGCGAATGCCATCCGGCATCATTGATTACTCAACAAAAATATGTGGATAAAACCGAGACATATCCTGG
GTGATCAATGCACGGTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGF
PQALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA
ALRDEGIMLVASGNVVHNLRTVKWHGDSSSYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
VLGAWDGQEPITIPVDGIEMGSLSMLSVQIG

Sequences:

>Translated_271_residues
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGF
PQALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA
ALRDEGIMLVASGNVVHNLRTVKWHGDSSSYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
VLGAWDGQEPITIPVDGIEMGSLSMLSVQIG
>Mature_270_residues
TPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFP
QALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAA
LRDEGIMLVASGNVVHNLRTVKWHGDSSSYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLYV
LGAWDGQEPITIPVDGIEMGSLSMLSVQIG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=96.9465648854962, Blast_Score=521, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29849; Mature: 29717

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFT
CCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEE
RGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEAWGFD
CCCCCEEECCCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCHHCCCC
HGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLR
CCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHCCCEEEECCCCEEEEECCCEEEEEE
TVKWHGDSSSYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
EEEECCCCCCCCEEECCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHEEEE
VLGAWDGQEPITIPVDGIEMGSLSMLSVQIG
EEECCCCCCCEEEEECCCCCCCEEEEEEEEC
>Mature Secondary Structure 
TPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFT
CHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEE
RGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEAWGFD
CCCCCEEECCCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCHHCCCC
HGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLR
CCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHCCCEEEECCCCEEEEECCCEEEEEE
TVKWHGDSSSYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
EEEECCCCCCCCEEECCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHEEEE
VLGAWDGQEPITIPVDGIEMGSLSMLSVQIG
EEECCCCCCCEEEEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]