| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is yghX [H]
Identifier: 187731686
GI number: 187731686
Start: 3189974
End: 3190411
Strand: Reverse
Name: yghX [H]
Synonym: SbBS512_E3428
Alternate gene names: 187731686
Gene position: 3190411-3189974 (Counterclockwise)
Preceding gene: 187732008
Following gene: 187730110
Centisome position: 69.12
GC content: 52.05
Gene sequence:
>438_bases ATGCCGCGTTTAACCGCCAAAGATTTCCCACAAGAGTTGTTGGATTACTACGACTATTACGCTCACGGGAAAATTTCGAA ACGTGAGTTCCTCAACCTTGCGGCGAAGTATGCGGTGGGCGGGATGACGGCATTAGCGTTGTTTGATTTGCTCAAGCCAA ATTATGCGCTGACGACTCAGGTAGAGTTTACCGACCCGGAGATTGTTGCTGAGTACATCACGTATCCTTCGCCAAATGGT CACGGCGAGGTACGGGGTTATCTGGTGAAACCCGCAAAAATGAGCGGCAAAACGCCAGCCGTGGTGGTGGTGCATGAGAA TCGTGGACTGAATCCGTATATCGAAGATGTGGCACGGCGAGTGACGAAGGCGGGGTATATCGCCCTGGCACCTGACGGCT TAAGTTCCGTTGGAGGGGTAATGCTGCCAACTTACTGA
Upstream 100 bases:
>100_bases CCAGCGCGTATCCCGTAGTCTGGCTCACAGAGTGACGAAAAACTGGGCAAAAACACGCGCTTATGCTTTGCTTAAAAAAC ACCAGTTGAGGAATGCAACG
Downstream 100 bases:
>100_bases TTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGG CGTGGTGCGTAACGGCAAAA
Product: carboxymethylenebutenolidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTALALFDLLKPNYALTTQVEFTDPEIVAEYITYPSPNG HGEVRGYLVKPAKMSGKTPAVVVVHENRGLNPYIEDVARRVTKAGYIALAPDGLSSVGGVMLPTY
Sequences:
>Translated_145_residues MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTALALFDLLKPNYALTTQVEFTDPEIVAEYITYPSPNG HGEVRGYLVKPAKMSGKTPAVVVVHENRGLNPYIEDVARRVTKAGYIALAPDGLSSVGGVMLPTY >Mature_144_residues PRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTALALFDLLKPNYALTTQVEFTDPEIVAEYITYPSPNGH GEVRGYLVKPAKMSGKTPAVVVVHENRGLNPYIEDVARRVTKAGYIALAPDGLSSVGGVMLPTY
Specific function: Unknown
COG id: COG0412
COG function: function code Q; Dienelactone hydrolase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002925 [H]
Pfam domain/function: PF01738 DLH [H]
EC number: NA
Molecular weight: Translated: 15974; Mature: 15842
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTALALFDLLKPNYALTTQ CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEE VEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVVVVHENRGLNPYIEDVARR EECCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHH VTKAGYIALAPDGLSSVGGVMLPTY HHHCCEEEECCCCCHHCCCEECCCC >Mature Secondary Structure PRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTALALFDLLKPNYALTTQ CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEE VEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVVVVHENRGLNPYIEDVARR EECCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHH VTKAGYIALAPDGLSSVGGVMLPTY HHHCCEEEECCCCCHHCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]