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The map label for this gene is rcsA

Identifier: 187730730

GI number: 187730730

Start: 978652

End: 979263

Strand: Direct

Name: rcsA

Synonym: SbBS512_E1072

Alternate gene names: 187730730

Gene position: 978652-979263 (Clockwise)

Preceding gene: 187733359

Following gene: 187731671

Centisome position: 21.2

GC content: 38.07

Gene sequence:

>612_bases
ATGTCAACGATTATTATGGATTTATGTAGTTACACCCGACTAGGTTTAACCGGGTATCTGTTGAGTAGAGGGGTTAAAAA
AAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTA
ATGAGGACTGTTTCATCCATGATGCTTCTAACAGTCAGCACATCAAGCACATCAAGCACATCATTAATCAACATCCCAAT
ACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGCCAGAAAAAATTTATTGATAAG
TTCTAAATCGATTAAACCGGAATCTCTCGACAATATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCTTTTT
TAAATATGCCGACGTTATCATTGAGCCGAACCGAATCGAGTATGTTGCGAATGTGGATGGCAGGTCAGGGAACCATTCAA
ATCTCTGACCAAATGAATATCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAA
TAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAGGTGA

Upstream 100 bases:

>100_bases
CGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTAC
GCATTGAGTGAGGGTATGCC

Downstream 100 bases:

>100_bases
TGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCC
TGTTCAGCTACTGACGGGGT

Product: colanic acid capsular biosynthesis activation protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSVVFINEDCFIHDASNSQHIKHIKHIINQHPN
TLFIVFMAIANVHFDEYLLARKNLLISSKSIKPESLDNILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQ
ISDQMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTR

Sequences:

>Translated_203_residues
MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSVVFINEDCFIHDASNSQHIKHIKHIINQHPN
TLFIVFMAIANVHFDEYLLARKNLLISSKSIKPESLDNILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQ
ISDQMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTR
>Mature_202_residues
STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSVVFINEDCFIHDASNSQHIKHIKHIINQHPNT
LFIVFMAIANVHFDEYLLARKNLLISSKSIKPESLDNILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQI
SDQMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTR

Specific function: Positive regulator of capsular polysaccharide synthesis. RcsA and rcsB form a complex to promote transcription of the genes for capsule synthesis [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788262, Length=202, Percent_Identity=96.5346534653465, Blast_Score=394, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23095; Mature: 22964

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSVVFINEDCFIH
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCEEEEECCEEEE
DASNSQHIKHIKHIINQHPNTLFIVFMAIANVHFDEYLLARKNLLISSKSIKPESLDNIL
ECCCCHHHHHHHHHHHCCCCCEEHHHHHHHHCCHHHHHHHHHHHEEECCCCCHHHHHHHH
GDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISDQMNIKAKTVSSHKGNIK
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHH
RKIKTHNKQVIYHVVRLTDNVTR
HHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSVVFINEDCFIH
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCEEEEECCEEEE
DASNSQHIKHIKHIINQHPNTLFIVFMAIANVHFDEYLLARKNLLISSKSIKPESLDNIL
ECCCCHHHHHHHHHHHCCCCCEEHHHHHHHHCCHHHHHHHHHHHEEECCCCCHHHHHHHH
GDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISDQMNIKAKTVSSHKGNIK
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHH
RKIKTHNKQVIYHVVRLTDNVTR
HHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]