Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is 186476847
Identifier: 186476847
GI number: 186476847
Start: 2350473
End: 2352656
Strand: Direct
Name: 186476847
Synonym: Bphy_2093
Alternate gene names: NA
Gene position: 2350473-2352656 (Clockwise)
Preceding gene: 186476845
Following gene: 186476848
Centisome position: 67.56
GC content: 64.56
Gene sequence:
>2184_bases GTGCGCAAGCGCACTTATTACACGTCGACCGACCGCCTTAACATGCCCGCATTGATCGAAGACTATGCACTCATCGGCGA CGGCCACACGGCCGCGCTGGTTTCCCGCGATGGTTCCGTCGACTGGCTGTGCTGGCCCCGTTTCGACTCCGGCGCGTGCT TTGCCGCACTGCTCGGAACCGAGGAGAACGGCCGCTGGCTGATCGCGCCCTCCGACGATACCGAATGCGAAGACTCGGCA GACCTGCCCTGCGCCGACGAATCCGGCCATGACCGGACGCGTTTTCACGACGAGACGCAAGGAGAAACGAAAACATCCGA AAGCGGACGTACGGTATCGAACGATAAACCGGTCCCACGCCAGGCCGACGGTCCGCCCGTCTCGCGTGCCGCCGCACGCG CAAACGCCGCGGCCGCCGAGGCAAAGCGCGATGCTCACGATGACGACAAGAGAAAAGCGCCTAACCTCAAGCCCGGCTAC GCACGCGCGACGCGCCGTCGCTATCGCGGCGAAACGCTGATCCTCGAGACCGACTTCGAAACGCCCGACGGCGCCGTTAC ACTGGTCGACTTCATGCCCCCCGGCAACGGCTGGTCGGAAATGATCCGCATCGTCGTCGGCAAGCGCGGCACCGTGAAGA TGCGCATGGAACTCGTGCTGCGCTTCGACTACGGCTTCTCCATTCCGTGGGTCAGCCGGCTCGCGCACGAAAGCGGCATC AAGGCGATCGCCGGCCCGGACACGGTCGCGCTGCGTACACCCGTCGACCTGCATGGCGAGAACATGAAGACGGTCGCCGA GTTCACCGTATCGGAAGGCGAACGTGTGCCCTTCTCGCTCACGTATTCCCAATCGCACCTGCGCATTCCGCCCGCGCGCG ATCCGCACAGTGCGCTGGCGCGTACCGAGAATCACTGGCTCGAATGGGCGGCGCGCGGCACCGTAGAGGGGAAATACGCG CCCGCTATACGCCGCTCGCTGCTGACACTGAAGGCACTCGCGTATGAGCCGACGGGCGGCATCGTCGCCGCGCCGACCAC GTCTCTGCCTGAAAAGCTCGGCGGCGCGCGCAACTGGGATTATCGCTACGTGTGGCTGCGCGACGCCACCATCACGCTGC TCGCGATGATGCGCGGCGGCTACTACGACGAAGCGCGTGCGTGGCGTGCGTGGCTGGGTCGCGTGATGGCGGGCTCGCCT GAACAGTTGCAGATCATGTACGGGCTCGCGGGCGAGCGTCGGCTGCCCGAGTTCGAACTCGACTGGCTGCCGGGCTACGA AGACTCGAAGCCCGTGCGGGTCGGCAACAACGCGGTCGGCCAGTTGCAACTCGACGTATACGGCGAAGTGATGAATGCGC TGCATCTCGCGCGCGTCGGCGGCTTGCAGGCTGACGAGACCGCGTGGAACGTGCAGTGCGCGATGCTTGGTCACCTCGAA ACGATCTGGCAGGAACGCGACGAAGGTATCTGGGAAACGCGAGGCGGCCGACAGCACTTCACGTTCTCGAAGGTGATGGC GTGGGTCGCGTTCGATCGCGCGATCAAATCGGCGCAAGCGTTCGACCTGCCCGGGCCGCTCGAACACTGGCAGGAAATAC GCGCGCAAATCCATGCCGACGTCTGCGAGAAAAGCTGGAATACGCGGCTCAACGCGTTCACGCAGACGTATGGCGGCAAC GAACTCGATGCGAGCGTGCTGCTGATGCCGCTGCTCGGCTTTTTGCCGCCTTCAGATCCGCGCGTCGTCGGCACCGTCCA CGCGATCGAAAAACATCTGATGCGCGACGGCTTCGTGCTGCGCTACCACACGACCGAATTCGACGATGGGCTGCCGCCCG GCGAAGGGACGTTTCTCGCATGCAGTTTCTGGATGGTCGACAATCTCGCGTTGCAGGGGCGCGTCGACGAGGCGCGGGCC ATGTACGAGCGGTTGCTGTCGCTGGCGAACGACGTCGGCCTGCTCGCCGAGGAATACGATCCCGCCGACGGCCGGTTTGT CGGCAATTTTCCACAGGGGTTTTCCCATGTGGCCCTCGTTCACACGGGACTCAACCTGATGAAACACGAGCAGGAAATGG CGCGCGCCGCCGGTCAGCCGCCCCACGACGGCGAGAGCGGAGAAGGCGGCCCGCCGCCGGCTGGCATGTCAGATGCTCAG AGTCAATCGTCACCCGTTGTCTAA
Upstream 100 bases:
>100_bases CAAAAACGGTATTGCCAATACCTCGAACGCTCATGAGCGTGCGGCTTTCCCGCGTCGCGCTGGAGCCCGGTAACAACGAC GCTCACGCACCGTTCCCGCC
Downstream 100 bases:
>100_bases AGAAAACGGGCGAATTGACGATGACGTAGCTATGACAGCCGGTGCGTGCGGCAACGCACTGTTGTTGCATTGCACAAATT GTATGGCTTCTATATCATCA
Product: glycoside hydrolase 15-like protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Glucoamylase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose 6-Phosphatase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Protein; Trehalose-6-Phosphate Phophatase; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 727; Mature: 727
Protein sequence:
>727_residues MRKRTYYTSTDRLNMPALIEDYALIGDGHTAALVSRDGSVDWLCWPRFDSGACFAALLGTEENGRWLIAPSDDTECEDSA DLPCADESGHDRTRFHDETQGETKTSESGRTVSNDKPVPRQADGPPVSRAAARANAAAAEAKRDAHDDDKRKAPNLKPGY ARATRRRYRGETLILETDFETPDGAVTLVDFMPPGNGWSEMIRIVVGKRGTVKMRMELVLRFDYGFSIPWVSRLAHESGI KAIAGPDTVALRTPVDLHGENMKTVAEFTVSEGERVPFSLTYSQSHLRIPPARDPHSALARTENHWLEWAARGTVEGKYA PAIRRSLLTLKALAYEPTGGIVAAPTTSLPEKLGGARNWDYRYVWLRDATITLLAMMRGGYYDEARAWRAWLGRVMAGSP EQLQIMYGLAGERRLPEFELDWLPGYEDSKPVRVGNNAVGQLQLDVYGEVMNALHLARVGGLQADETAWNVQCAMLGHLE TIWQERDEGIWETRGGRQHFTFSKVMAWVAFDRAIKSAQAFDLPGPLEHWQEIRAQIHADVCEKSWNTRLNAFTQTYGGN ELDASVLLMPLLGFLPPSDPRVVGTVHAIEKHLMRDGFVLRYHTTEFDDGLPPGEGTFLACSFWMVDNLALQGRVDEARA MYERLLSLANDVGLLAEEYDPADGRFVGNFPQGFSHVALVHTGLNLMKHEQEMARAAGQPPHDGESGEGGPPPAGMSDAQ SQSSPVV
Sequences:
>Translated_727_residues MRKRTYYTSTDRLNMPALIEDYALIGDGHTAALVSRDGSVDWLCWPRFDSGACFAALLGTEENGRWLIAPSDDTECEDSA DLPCADESGHDRTRFHDETQGETKTSESGRTVSNDKPVPRQADGPPVSRAAARANAAAAEAKRDAHDDDKRKAPNLKPGY ARATRRRYRGETLILETDFETPDGAVTLVDFMPPGNGWSEMIRIVVGKRGTVKMRMELVLRFDYGFSIPWVSRLAHESGI KAIAGPDTVALRTPVDLHGENMKTVAEFTVSEGERVPFSLTYSQSHLRIPPARDPHSALARTENHWLEWAARGTVEGKYA PAIRRSLLTLKALAYEPTGGIVAAPTTSLPEKLGGARNWDYRYVWLRDATITLLAMMRGGYYDEARAWRAWLGRVMAGSP EQLQIMYGLAGERRLPEFELDWLPGYEDSKPVRVGNNAVGQLQLDVYGEVMNALHLARVGGLQADETAWNVQCAMLGHLE TIWQERDEGIWETRGGRQHFTFSKVMAWVAFDRAIKSAQAFDLPGPLEHWQEIRAQIHADVCEKSWNTRLNAFTQTYGGN ELDASVLLMPLLGFLPPSDPRVVGTVHAIEKHLMRDGFVLRYHTTEFDDGLPPGEGTFLACSFWMVDNLALQGRVDEARA MYERLLSLANDVGLLAEEYDPADGRFVGNFPQGFSHVALVHTGLNLMKHEQEMARAAGQPPHDGESGEGGPPPAGMSDAQ SQSSPVV >Mature_727_residues MRKRTYYTSTDRLNMPALIEDYALIGDGHTAALVSRDGSVDWLCWPRFDSGACFAALLGTEENGRWLIAPSDDTECEDSA DLPCADESGHDRTRFHDETQGETKTSESGRTVSNDKPVPRQADGPPVSRAAARANAAAAEAKRDAHDDDKRKAPNLKPGY ARATRRRYRGETLILETDFETPDGAVTLVDFMPPGNGWSEMIRIVVGKRGTVKMRMELVLRFDYGFSIPWVSRLAHESGI KAIAGPDTVALRTPVDLHGENMKTVAEFTVSEGERVPFSLTYSQSHLRIPPARDPHSALARTENHWLEWAARGTVEGKYA PAIRRSLLTLKALAYEPTGGIVAAPTTSLPEKLGGARNWDYRYVWLRDATITLLAMMRGGYYDEARAWRAWLGRVMAGSP EQLQIMYGLAGERRLPEFELDWLPGYEDSKPVRVGNNAVGQLQLDVYGEVMNALHLARVGGLQADETAWNVQCAMLGHLE TIWQERDEGIWETRGGRQHFTFSKVMAWVAFDRAIKSAQAFDLPGPLEHWQEIRAQIHADVCEKSWNTRLNAFTQTYGGN ELDASVLLMPLLGFLPPSDPRVVGTVHAIEKHLMRDGFVLRYHTTEFDDGLPPGEGTFLACSFWMVDNLALQGRVDEARA MYERLLSLANDVGLLAEEYDPADGRFVGNFPQGFSHVALVHTGLNLMKHEQEMARAAGQPPHDGESGEGGPPPAGMSDAQ SQSSPVV
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80555; Mature: 80555
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKRTYYTSTDRLNMPALIEDYALIGDGHTAALVSRDGSVDWLCWPRFDSGACFAALLGT CCCCEEECCCCCCCCCHHHHCCEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECC EENGRWLIAPSDDTECEDSADLPCADESGHDRTRFHDETQGETKTSESGRTVSNDKPVPR CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QADGPPVSRAAARANAAAAEAKRDAHDDDKRKAPNLKPGYARATRRRYRGETLILETDFE CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCC TPDGAVTLVDFMPPGNGWSEMIRIVVGKRGTVKMRMELVLRFDYGFSIPWVSRLAHESGI CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCC KAIAGPDTVALRTPVDLHGENMKTVAEFTVSEGERVPFSLTYSQSHLRIPPARDPHSALA CEECCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCHHHHHH RTENHWLEWAARGTVEGKYAPAIRRSLLTLKALAYEPTGGIVAAPTTSLPEKLGGARNWD HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCHHHHCCCCCCC YRYVWLRDATITLLAMMRGGYYDEARAWRAWLGRVMAGSPEQLQIMYGLAGERRLPEFEL EEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC DWLPGYEDSKPVRVGNNAVGQLQLDVYGEVMNALHLARVGGLQADETAWNVQCAMLGHLE CCCCCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHH TIWQERDEGIWETRGGRQHFTFSKVMAWVAFDRAIKSAQAFDLPGPLEHWQEIRAQIHAD HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH VCEKSWNTRLNAFTQTYGGNELDASVLLMPLLGFLPPSDPRVVGTVHAIEKHLMRDGFVL HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCEEE RYHTTEFDDGLPPGEGTFLACSFWMVDNLALQGRVDEARAMYERLLSLANDVGLLAEEYD EEECCCCCCCCCCCCCCEEEEEEEHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC PADGRFVGNFPQGFSHVALVHTGLNLMKHEQEMARAAGQPPHDGESGEGGPPPAGMSDAQ CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC SQSSPVV CCCCCCC >Mature Secondary Structure MRKRTYYTSTDRLNMPALIEDYALIGDGHTAALVSRDGSVDWLCWPRFDSGACFAALLGT CCCCEEECCCCCCCCCHHHHCCEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECC EENGRWLIAPSDDTECEDSADLPCADESGHDRTRFHDETQGETKTSESGRTVSNDKPVPR CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QADGPPVSRAAARANAAAAEAKRDAHDDDKRKAPNLKPGYARATRRRYRGETLILETDFE CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCC TPDGAVTLVDFMPPGNGWSEMIRIVVGKRGTVKMRMELVLRFDYGFSIPWVSRLAHESGI CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCC KAIAGPDTVALRTPVDLHGENMKTVAEFTVSEGERVPFSLTYSQSHLRIPPARDPHSALA CEECCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCHHHHHH RTENHWLEWAARGTVEGKYAPAIRRSLLTLKALAYEPTGGIVAAPTTSLPEKLGGARNWD HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCHHHHCCCCCCC YRYVWLRDATITLLAMMRGGYYDEARAWRAWLGRVMAGSPEQLQIMYGLAGERRLPEFEL EEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC DWLPGYEDSKPVRVGNNAVGQLQLDVYGEVMNALHLARVGGLQADETAWNVQCAMLGHLE CCCCCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHH TIWQERDEGIWETRGGRQHFTFSKVMAWVAFDRAIKSAQAFDLPGPLEHWQEIRAQIHAD HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH VCEKSWNTRLNAFTQTYGGNELDASVLLMPLLGFLPPSDPRVVGTVHAIEKHLMRDGFVL HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCEEE RYHTTEFDDGLPPGEGTFLACSFWMVDNLALQGRVDEARAMYERLLSLANDVGLLAEEYD EEECCCCCCCCCCCCCCEEEEEEEHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC PADGRFVGNFPQGFSHVALVHTGLNLMKHEQEMARAAGQPPHDGESGEGGPPPAGMSDAQ CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC SQSSPVV CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA