Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is 186476786
Identifier: 186476786
GI number: 186476786
Start: 2282362
End: 2282946
Strand: Direct
Name: 186476786
Synonym: Bphy_2031
Alternate gene names: NA
Gene position: 2282362-2282946 (Clockwise)
Preceding gene: 186476785
Following gene: 186476787
Centisome position: 65.6
GC content: 63.76
Gene sequence:
>585_bases ATGAAGTCAGTCTGCGTCTATTGCGGCTCGTCGGACGGAGCCAAACCGCTGTATCGCGAGGCCGCCAAAGCATTCGGCCG CGCGCTCGTCGCGGCGAACCTGTCGCTCGTCTATGGCGGCGGCAAGGTCGGCCTGATGGGCGTGATCGCCGATGAAGTGA TGGCCGCAGGCGGCCGCGCAATCGGCGTCATCCCCGAACTGCTGGTCAACAAGGAAGTCGGTCACGACGGCCTGTCGGAA CTGCACGTCGTGCCCAACATGCACCATCGCAAGAAGATGATGGCCGACCTGTCCGATGCGTTCGTCGCCATGCCGGGCGG CGCGGGCACGCTCGAAGAGCTGTTCGAAGTCTTCACGTGGGCACAGCTCGGCTATCACCAGAAAGCCGTGGCCGTGCTCA ACATCGACGGCTTCTACGATCCGCTGATCTCCATGCTCGAACACACGGTGCAGGAAGGCTTCATGCGCCAGGCGTATTTC GACATCCTGCAGGTCGACAGCGACCCCGCCGCGCTGATCGGCAGGCTGCAACGCTATCAGCCGCCTTTGCAGGACAAATG GGCGGACCGGCGCGAGCGCGTCTGA
Upstream 100 bases:
>100_bases AACTGTTCGACGACCTCGTGTCCGGCAAGCATCCGCAACGCGAGTTCTACGACTATCTGCCGCCGCGCGAACCTCGTAAC GAATCGAAGGACAGTTGAAG
Downstream 100 bases:
>100_bases CGCACGCCTCGCTCATGCGCTTCACCAGCCGGGAGGACACATGACGAAAGTGGTTCTGATCACGGGCGCGAGCCGCGGCA TCGGCCGCGCGACGGCGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MKSVCVYCGSSDGAKPLYREAAKAFGRALVAANLSLVYGGGKVGLMGVIADEVMAAGGRAIGVIPELLVNKEVGHDGLSE LHVVPNMHHRKKMMADLSDAFVAMPGGAGTLEELFEVFTWAQLGYHQKAVAVLNIDGFYDPLISMLEHTVQEGFMRQAYF DILQVDSDPAALIGRLQRYQPPLQDKWADRRERV
Sequences:
>Translated_194_residues MKSVCVYCGSSDGAKPLYREAAKAFGRALVAANLSLVYGGGKVGLMGVIADEVMAAGGRAIGVIPELLVNKEVGHDGLSE LHVVPNMHHRKKMMADLSDAFVAMPGGAGTLEELFEVFTWAQLGYHQKAVAVLNIDGFYDPLISMLEHTVQEGFMRQAYF DILQVDSDPAALIGRLQRYQPPLQDKWADRRERV >Mature_194_residues MKSVCVYCGSSDGAKPLYREAAKAFGRALVAANLSLVYGGGKVGLMGVIADEVMAAGGRAIGVIPELLVNKEVGHDGLSE LHVVPNMHHRKKMMADLSDAFVAMPGGAGTLEELFEVFTWAQLGYHQKAVAVLNIDGFYDPLISMLEHTVQEGFMRQAYF DILQVDSDPAALIGRLQRYQPPLQDKWADRRERV
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LOG family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322406, Length=218, Percent_Identity=44.0366972477064, Blast_Score=178, Evalue=6e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005269 [H]
Pfam domain/function: PF03641 Lysine_decarbox [H]
EC number: NA
Molecular weight: Translated: 21192; Mature: 21192
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSVCVYCGSSDGAKPLYREAAKAFGRALVAANLSLVYGGGKVGLMGVIADEVMAAGGRA CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHCCCCH IGVIPELLVNKEVGHDGLSELHVVPNMHHRKKMMADLSDAFVAMPGGAGTLEELFEVFTW HHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH AQLGYHQKAVAVLNIDGFYDPLISMLEHTVQEGFMRQAYFDILQVDSDPAALIGRLQRYQ HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC PPLQDKWADRRERV CCHHHHHHHHHCCC >Mature Secondary Structure MKSVCVYCGSSDGAKPLYREAAKAFGRALVAANLSLVYGGGKVGLMGVIADEVMAAGGRA CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHCCCCH IGVIPELLVNKEVGHDGLSELHVVPNMHHRKKMMADLSDAFVAMPGGAGTLEELFEVFTW HHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH AQLGYHQKAVAVLNIDGFYDPLISMLEHTVQEGFMRQAYFDILQVDSDPAALIGRLQRYQ HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC PPLQDKWADRRERV CCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 2116366 [H]