Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_010622 |
Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is murI [H]
Identifier: 186476698
GI number: 186476698
Start: 2188575
End: 2189486
Strand: Direct
Name: murI [H]
Synonym: Bphy_1943
Alternate gene names: 186476698
Gene position: 2188575-2189486 (Clockwise)
Preceding gene: 186476697
Following gene: 186476699
Centisome position: 62.9
GC content: 65.24
Gene sequence:
>912_bases ATGGCTTCCGTTGAAACCATGACCGCTTCGCCCCCCATTTCCACCTCGTCCACTTCATTGCCGGCGCTTGTCTCGCTCGA TCCGCGCGCGCCTGTCGGCATTTTCGATTCGGGTTTGGGCGGGTTGTCGGTGCTGCGCGCGGTTCGCTCGCAACTGCCGA GTGAAGCGATTGTCTACGTCGCGGATTCGCTCTACGCGCCCTATGGTGAGCGCGACGACGATTTCATCGCCGACCGCACG CTCGCGATCGGCGAATGGCTCATCGCGCAAGGCGCGAAGGCGCTCGTAGTCGCGTGCAATACGGCGACCGCGCAGTCGAT CGCGCTGGTGCGAGAAAAACTGCCCATTCAATTGATCGGCGTCGAACCGGGTGTAAAGCCCGCGGCGCAGCAGTCGAAAT CGCGTGTCGCAGGCGTGCTCGCGACCCGCGTCACGCTGCGCAGCGCGCGCTTCCAAGGCCTGCTTGAACGTTACGCCAGC GACTGCCGCTTCCTGTGCCAGCCAGGACACGGCCTCGTGGAAGCTGTGGAGCGCTGCGACATCGAATCGGCCGAACTGCG CGCGCTGCTCGTCAGCTACGTCCAGCCAATGCTCGACGCGGGCGCCGACACGCTCGTGCTCGGCTGCACGCATTACCCGT TTCTGGACGCAGCGATCCGCGACATCGCCGGTGACCGGCTGACGCTGATCGACACGAGCGTCGCGATCGCCCGGCAACTG GAACGCGTGCTCGACCAGCAAGGGCTGCGCTCGCCGGAGCGCGATACCGTGCCGCCGCCGCGCTTTTGCTCGACCAGCGA CGGCGCACATCTGAAGCAGCTCGCCAAAACATTGCTGAATATCGACGCGCCTGTCGAGCGCGTACATATCCCTTCGCGCC GCACGATCGCACGAGATCCCCACGCCGCCTGA
Upstream 100 bases:
>100_bases AAATAAGACAAACCGCCAGCAGGAAGCGTCCCGAGTCCTGCTACACTTCTGCGGTCCGATCCGCGCAACGTTCCAGGCAG CGCTGCGCGGATTTTCTTAT
Downstream 100 bases:
>100_bases CGCCGCCTGCCCGCAAAGCCGGCTTGATGCGTCGTTTTGATGCACAAGCCGCCTGAAGCGCAGACGGGACGGCAACGCCC ATCAGGCAAAGGCGACGCGC
Product: glutamate racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MASVETMTASPPISTSSTSLPALVSLDPRAPVGIFDSGLGGLSVLRAVRSQLPSEAIVYVADSLYAPYGERDDDFIADRT LAIGEWLIAQGAKALVVACNTATAQSIALVREKLPIQLIGVEPGVKPAAQQSKSRVAGVLATRVTLRSARFQGLLERYAS DCRFLCQPGHGLVEAVERCDIESAELRALLVSYVQPMLDAGADTLVLGCTHYPFLDAAIRDIAGDRLTLIDTSVAIARQL ERVLDQQGLRSPERDTVPPPRFCSTSDGAHLKQLAKTLLNIDAPVERVHIPSRRTIARDPHAA
Sequences:
>Translated_303_residues MASVETMTASPPISTSSTSLPALVSLDPRAPVGIFDSGLGGLSVLRAVRSQLPSEAIVYVADSLYAPYGERDDDFIADRT LAIGEWLIAQGAKALVVACNTATAQSIALVREKLPIQLIGVEPGVKPAAQQSKSRVAGVLATRVTLRSARFQGLLERYAS DCRFLCQPGHGLVEAVERCDIESAELRALLVSYVQPMLDAGADTLVLGCTHYPFLDAAIRDIAGDRLTLIDTSVAIARQL ERVLDQQGLRSPERDTVPPPRFCSTSDGAHLKQLAKTLLNIDAPVERVHIPSRRTIARDPHAA >Mature_302_residues ASVETMTASPPISTSSTSLPALVSLDPRAPVGIFDSGLGGLSVLRAVRSQLPSEAIVYVADSLYAPYGERDDDFIADRTL AIGEWLIAQGAKALVVACNTATAQSIALVREKLPIQLIGVEPGVKPAAQQSKSRVAGVLATRVTLRSARFQGLLERYASD CRFLCQPGHGLVEAVERCDIESAELRALLVSYVQPMLDAGADTLVLGCTHYPFLDAAIRDIAGDRLTLIDTSVAIARQLE RVLDQQGLRSPERDTVPPPRFCSTSDGAHLKQLAKTLLNIDAPVERVHIPSRRTIARDPHAA
Specific function: Provides the (R)-glutamate required for cell wall biosynthesis [H]
COG id: COG0796
COG function: function code M; Glutamate racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate/glutamate racemases family [H]
Homologues:
Organism=Escherichia coli, GI87082355, Length=226, Percent_Identity=34.9557522123894, Blast_Score=129, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015942 - InterPro: IPR001920 - InterPro: IPR018187 - InterPro: IPR004391 [H]
Pfam domain/function: PF01177 Asp_Glu_race [H]
EC number: =5.1.1.3 [H]
Molecular weight: Translated: 32468; Mature: 32336
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASVETMTASPPISTSSTSLPALVSLDPRAPVGIFDSGLGGLSVLRAVRSQLPSEAIVYV CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEEH ADSLYAPYGERDDDFIADRTLAIGEWLIAQGAKALVVACNTATAQSIALVREKLPIQLIG HHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEE VEPGVKPAAQQSKSRVAGVLATRVTLRSARFQGLLERYASDCRFLCQPGHGLVEAVERCD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHCC IESAELRALLVSYVQPMLDAGADTLVLGCTHYPFLDAAIRDIAGDRLTLIDTSVAIARQL CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHH ERVLDQQGLRSPERDTVPPPRFCSTSDGAHLKQLAKTLLNIDAPVERVHIPSRRTIARDP HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCC HAA CCC >Mature Secondary Structure ASVETMTASPPISTSSTSLPALVSLDPRAPVGIFDSGLGGLSVLRAVRSQLPSEAIVYV CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEEH ADSLYAPYGERDDDFIADRTLAIGEWLIAQGAKALVVACNTATAQSIALVREKLPIQLIG HHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEE VEPGVKPAAQQSKSRVAGVLATRVTLRSARFQGLLERYASDCRFLCQPGHGLVEAVERCD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHCC IESAELRALLVSYVQPMLDAGADTLVLGCTHYPFLDAAIRDIAGDRLTLIDTSVAIARQL CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHH ERVLDQQGLRSPERDTVPPPRFCSTSDGAHLKQLAKTLLNIDAPVERVHIPSRRTIARDP HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCC HAA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]