Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_010622 |
Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186476666
Identifier: 186476666
GI number: 186476666
Start: 2158679
End: 2159674
Strand: Direct
Name: 186476666
Synonym: Bphy_1911
Alternate gene names: NA
Gene position: 2158679-2159674 (Clockwise)
Preceding gene: 186476622
Following gene: 186476667
Centisome position: 62.05
GC content: 59.64
Gene sequence:
>996_bases ATGACAGAGTCCATCCATCCGACCGCAGCTCGCCTGCTTTTAGCTGCCGCCTCGTTGAGCCAGGAAGGCGTAAGCGGCCC TTCCGACCTCGCGCGTGTGCTCGGTGTCTCTCCGCAGGTGGCGACGAACTGGATGCGGCGCGGCGTATCGAAGGAAGGCA TGCTGGCCGCGCAAGAGAAGCTCGGAGCGAACCCCACGTGGATCCGGACAGGCGAAGGGGAAATGGCGTCGGCCGGTGTT AAGCACACACCTACCGAAATCAAAGACCCGAATAGCATCTATAAGGCGCCCGTCTCCGAGCCTTCGGAAATCGCGACCCC CGATAATCTAGATCCCACGACATTGACGGGGCCGCAGCGGATCCGGGCCTCGCTCGGGCCGCAAAATCTGACAGCTGAAA CGCTGGCAAGCGTCGCAGCCGTCGGTGCCGACGTCGCATCGCTTTGGCTAGCTGGTCAAGGCCCCGAGCCGACACTCATT CAGGCCGTCGCGCTACAGAATACATACGGGGTTAATTCGGTTTGGATTCTCAAAGGTAAGGGAACACCAGGCGTCGCCGT CCGATACGACGATGAGTGGCGACCGGTGACATTTAAGAATTGGCACCTCGTGCCGGTGAAGGGCATGGCGCAACTAGGCG ATAACGGATATTGGGCTGAGATCGAATATGGCGAGGGGTACGTCGCCACTGCCAGCCTCGACAAGGACGCATACGCCGTT CGTTGCAAGGGCGACTCGATGCGGCCTCGCATTAAGGACGGCGAGTACGTCGTGCTCGAGCCCAACCAGCCGATCAATCC GGGCGACGAGGTGCTTGTAAAGGCAAAAGACGGCCGCGTCATGGTGAAGGAATTCGTCTACGAGGCCCAAGGCAAGATTT TTCTGCTATCGACGAACGAGGCACACGGAAAGATTTCCGTCGAGCGCGCCAATATCGAGCACATGCATTACGTCGGCTGG ATTGCGAAGCCCTCGGCATATAGAGCCCAGAGCTAG
Upstream 100 bases:
>100_bases GGAGTGTTTGCTCATAGTGCGTTCATTAAACACCATGTTTAAACAAAAAGCAAACACCACGTGTAACAACAAAACGTTTA CTTGGGCGACAATCCGCGCC
Downstream 100 bases:
>100_bases GCGACAGGCCAACCAAGACGACCAAACCCGCTATGGCGGGTTTTTTTGTTTCATCACCGTCCAGACGCAGAAAAATTAAA CACAGTGTTTGACATGCGGT
Product: putative phage repressor
Products: NA
Alternate protein names: Cro/CI Family Transcriptional Regulator; LexA Repressor; Peptidase; Repressor CI Bacteriophage Origin; Transcriptional Regulator Cro/CI Family; APSE-2 Prophage; Peptidase S
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MTESIHPTAARLLLAAASLSQEGVSGPSDLARVLGVSPQVATNWMRRGVSKEGMLAAQEKLGANPTWIRTGEGEMASAGV KHTPTEIKDPNSIYKAPVSEPSEIATPDNLDPTTLTGPQRIRASLGPQNLTAETLASVAAVGADVASLWLAGQGPEPTLI QAVALQNTYGVNSVWILKGKGTPGVAVRYDDEWRPVTFKNWHLVPVKGMAQLGDNGYWAEIEYGEGYVATASLDKDAYAV RCKGDSMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGRVMVKEFVYEAQGKIFLLSTNEAHGKISVERANIEHMHYVGW IAKPSAYRAQS
Sequences:
>Translated_331_residues MTESIHPTAARLLLAAASLSQEGVSGPSDLARVLGVSPQVATNWMRRGVSKEGMLAAQEKLGANPTWIRTGEGEMASAGV KHTPTEIKDPNSIYKAPVSEPSEIATPDNLDPTTLTGPQRIRASLGPQNLTAETLASVAAVGADVASLWLAGQGPEPTLI QAVALQNTYGVNSVWILKGKGTPGVAVRYDDEWRPVTFKNWHLVPVKGMAQLGDNGYWAEIEYGEGYVATASLDKDAYAV RCKGDSMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGRVMVKEFVYEAQGKIFLLSTNEAHGKISVERANIEHMHYVGW IAKPSAYRAQS >Mature_330_residues TESIHPTAARLLLAAASLSQEGVSGPSDLARVLGVSPQVATNWMRRGVSKEGMLAAQEKLGANPTWIRTGEGEMASAGVK HTPTEIKDPNSIYKAPVSEPSEIATPDNLDPTTLTGPQRIRASLGPQNLTAETLASVAAVGADVASLWLAGQGPEPTLIQ AVALQNTYGVNSVWILKGKGTPGVAVRYDDEWRPVTFKNWHLVPVKGMAQLGDNGYWAEIEYGEGYVATASLDKDAYAVR CKGDSMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGRVMVKEFVYEAQGKIFLLSTNEAHGKISVERANIEHMHYVGWI AKPSAYRAQS
Specific function: Unknown
COG id: COG2932
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35672; Mature: 35541
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTESIHPTAARLLLAAASLSQEGVSGPSDLARVLGVSPQVATNWMRRGVSKEGMLAAQEK CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHH LGANPTWIRTGEGEMASAGVKHTPTEIKDPNSIYKAPVSEPSEIATPDNLDPTTLTGPQR HCCCCCEEECCCCCHHCCCCCCCCCCCCCCCHHEECCCCCCHHCCCCCCCCCCCCCCHHH IRASLGPQNLTAETLASVAAVGADVASLWLAGQGPEPTLIQAVALQNTYGVNSVWILKGK HHHHCCCCCCCHHHHHHHHHHCCCHHHHEEECCCCCCHHEEEEECCCCCCCCEEEEEECC GTPGVAVRYDDEWRPVTFKNWHLVPVKGMAQLGDNGYWAEIEYGEGYVATASLDKDAYAV CCCCEEEEECCCCCCEEECCEEEEECCHHHHHCCCCEEEEEEECCCEEEEEECCCCCEEE RCKGDSMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGRVMVKEFVYEAQGKIFLLSTNE EECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEHHHHHHHCCCCEEEEECCC AHGKISVERANIEHMHYVGWIAKPSAYRAQS CCCEEEEEECCCCEEEEEEEEECCCCCCCCC >Mature Secondary Structure TESIHPTAARLLLAAASLSQEGVSGPSDLARVLGVSPQVATNWMRRGVSKEGMLAAQEK CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHH LGANPTWIRTGEGEMASAGVKHTPTEIKDPNSIYKAPVSEPSEIATPDNLDPTTLTGPQR HCCCCCEEECCCCCHHCCCCCCCCCCCCCCCHHEECCCCCCHHCCCCCCCCCCCCCCHHH IRASLGPQNLTAETLASVAAVGADVASLWLAGQGPEPTLIQAVALQNTYGVNSVWILKGK HHHHCCCCCCCHHHHHHHHHHCCCHHHHEEECCCCCCHHEEEEECCCCCCCCEEEEEECC GTPGVAVRYDDEWRPVTFKNWHLVPVKGMAQLGDNGYWAEIEYGEGYVATASLDKDAYAV CCCCEEEEECCCCCCEEECCEEEEECCHHHHHCCCCEEEEEEECCCEEEEEECCCCCEEE RCKGDSMRPRIKDGEYVVLEPNQPINPGDEVLVKAKDGRVMVKEFVYEAQGKIFLLSTNE EECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEHHHHHHHCCCCEEEEECCC AHGKISVERANIEHMHYVGWIAKPSAYRAQS CCCEEEEEECCCCEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA