Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
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Accession | NC_010622 |
Length | 3,479,187 |
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The map label for this gene is 186475990
Identifier: 186475990
GI number: 186475990
Start: 1381332
End: 1382093
Strand: Reverse
Name: 186475990
Synonym: Bphy_1231
Alternate gene names: NA
Gene position: 1382093-1381332 (Counterclockwise)
Preceding gene: 186475991
Following gene: 186475988
Centisome position: 39.72
GC content: 66.4
Gene sequence:
>762_bases ATGACGGATCACGACCTCGCGCAACGCCTCGTGCTTGCGCGCCGCCAGCACCGCGCCATCGACACGCTGCCGCTCGACTC CCTCCCGCCCGATGCAGCTACCGCCTACGCCATCCAGCAGGCGGTGATCGCGGGGCTGGGCGGGGAAACAGGCGCCTGGA AAATCGGTGCCAAAGCTCCCGGCGGTCCCGCCTCGGGCGCGCCGATTCCGGCCGCGCTGACGGTCGCGTCGCCGGCCCGT CTCGAACACGGTTCGTTTTTCCGCGTGCTGCTGGAACTGGAAGTCGCGTTCCGCTTCGCCGAGCCGATCGCGCCTCACGG GCAGGCGTATGCACGTGACGAGGTGCTCGCGCGCGTCGGCTCCGTCTTGCCGACCATCGAAATCGTGGACAGCCGCTTCG CCGAATGGCCGAACGTCGCGCCGCTCGCACAGCTCGCCGATGCGCAGAACAACGGCGCGCTCGTGACGGGCCATGCCGTG TCTTACGCGTCGATCGCGCGCTCGTTCGATTTCGTTTCGCCGGAACTCGAATTAACCTTTGACGGCAAGTCGCTCGTGCC CCAATCGCCCGGCAATCCCGCAGGCGATCCGCGCGAACTGCTCGTGTGGTTCGTCAACCATTGCGCCGCGATGGGTATCA CGATCCAGCCGGACTGGATCATCACGACGGGCTCTTATGTGGGCGCGCATCGCGTCGACGGCCCCGGAACCGTATACGGC CATATCGACGGACTGGGCGAAGTCGAAGTCGAATTGACGTAA
Upstream 100 bases:
>100_bases ATGAAGCAAGATCGTGGTGCGCGTGCCTTCGCCTCGCCGCCACGCCAAGCGCTACAGCTTCTGCCTCGCGCCGCCCCAAA CAGCCAACAAGGGATACGAC
Downstream 100 bases:
>100_bases ACCACTAAGACCACCAAGCAGCACCGCATCCGTTTCCCTGCATGCCGCGCCGGCGCTCTGACGTGCCGGTGCATGCGCAT GGACCCACGCCGGCTCGTGC
Product: putative hydratase/decarboxylase
Products: NA
Alternate protein names: 2-Keto-4-Pentenoate Hydratase-Like Protein; 2-Keto-4-Pentenoate Hydratase; 2-Oxopent-4-Enoate Hydratase; Hydratase; 2-Hydroxypenta-2 4-Dienoate Hydratase; 2-Keto-4-Pentenoate Hydratase-Like; Fumarylacetoacetate Hydrolase; Hydratase/Decarboxylase Family Protein
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTDHDLAQRLVLARRQHRAIDTLPLDSLPPDAATAYAIQQAVIAGLGGETGAWKIGAKAPGGPASGAPIPAALTVASPAR LEHGSFFRVLLELEVAFRFAEPIAPHGQAYARDEVLARVGSVLPTIEIVDSRFAEWPNVAPLAQLADAQNNGALVTGHAV SYASIARSFDFVSPELELTFDGKSLVPQSPGNPAGDPRELLVWFVNHCAAMGITIQPDWIITTGSYVGAHRVDGPGTVYG HIDGLGEVEVELT
Sequences:
>Translated_253_residues MTDHDLAQRLVLARRQHRAIDTLPLDSLPPDAATAYAIQQAVIAGLGGETGAWKIGAKAPGGPASGAPIPAALTVASPAR LEHGSFFRVLLELEVAFRFAEPIAPHGQAYARDEVLARVGSVLPTIEIVDSRFAEWPNVAPLAQLADAQNNGALVTGHAV SYASIARSFDFVSPELELTFDGKSLVPQSPGNPAGDPRELLVWFVNHCAAMGITIQPDWIITTGSYVGAHRVDGPGTVYG HIDGLGEVEVELT >Mature_252_residues TDHDLAQRLVLARRQHRAIDTLPLDSLPPDAATAYAIQQAVIAGLGGETGAWKIGAKAPGGPASGAPIPAALTVASPARL EHGSFFRVLLELEVAFRFAEPIAPHGQAYARDEVLARVGSVLPTIEIVDSRFAEWPNVAPLAQLADAQNNGALVTGHAVS YASIARSFDFVSPELELTFDGKSLVPQSPGNPAGDPRELLVWFVNHCAAMGITIQPDWIITTGSYVGAHRVDGPGTVYGH IDGLGEVEVELT
Specific function: Unknown
COG id: COG3971
COG function: function code Q; 2-keto-4-pentenoate hydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26693; Mature: 26562
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDHDLAQRLVLARRQHRAIDTLPLDSLPPDAATAYAIQQAVIAGLGGETGAWKIGAKAP CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCC GGPASGAPIPAALTVASPARLEHGSFFRVLLELEVAFRFAEPIAPHGQAYARDEVLARVG CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH SVLPTIEIVDSRFAEWPNVAPLAQLADAQNNGALVTGHAVSYASIARSFDFVSPELELTF HHCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEE DGKSLVPQSPGNPAGDPRELLVWFVNHCAAMGITIQPDWIITTGSYVGAHRVDGPGTVYG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCEECCCCCEEEE HIDGLGEVEVELT ECCCCCEEEEEEC >Mature Secondary Structure TDHDLAQRLVLARRQHRAIDTLPLDSLPPDAATAYAIQQAVIAGLGGETGAWKIGAKAP CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCC GGPASGAPIPAALTVASPARLEHGSFFRVLLELEVAFRFAEPIAPHGQAYARDEVLARVG CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH SVLPTIEIVDSRFAEWPNVAPLAQLADAQNNGALVTGHAVSYASIARSFDFVSPELELTF HHCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEE DGKSLVPQSPGNPAGDPRELLVWFVNHCAAMGITIQPDWIITTGSYVGAHRVDGPGTVYG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCEECCCCCEEEE HIDGLGEVEVELT ECCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA