| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
Click here to switch to the map view.
The map label for this gene is 183222110
Identifier: 183222110
GI number: 183222110
Start: 2844501
End: 2846621
Strand: Reverse
Name: 183222110
Synonym: LEPBI_I2752
Alternate gene names: NA
Gene position: 2846621-2844501 (Counterclockwise)
Preceding gene: 183222116
Following gene: 183222109
Centisome position: 79.08
GC content: 39.23
Gene sequence:
>2121_bases TTGTGTTTGTTTCGATTGGAAACGGCAGGTTTCCAACACCTTTATGGCTTCAAAATAGTCGACAATTGTTCGGGATTGAC AGTTTTGCCTGTCGATGGTAAAACGAGTAGGATGAAACTTCGGATTTTTTTGACACTCTTTCTTCTAATGACTCTTCCGA CATTTGCGGATGAACCGAACGCGTTTTTGGCAGGGATGTCCAAAAAAGACATCACAGGTCCACCGATCGGTGTCATGTTT TGGGGCTATGCAAGGGAGGACCAAACCGGTGTTGGGATCCAAACAAGGCAATACGCCAGAGCACTTGTCATTGAAGATCG TCTTACCCACAAATTATTCGCTTATGTAACTGCTGAGGTAGGTGGAATTCCTTTTGAGATCCAAAGGGAGGTTGTGGCCA AACTCCAAACGGAAGTGGATGCAAATTTCCATTTAGGAAATGTTTTGCTAAATGCTTCACATACTCATAGCGGACCTGCG GGTCATTTTCATTATTCGGAAGTATCTTTTTATTCTACTCAGTTTTACAAAGACACCTATCAAGTATTACGTGATGGTAT TGTGGAAGCAATCAAAGAGGCTTATCAAAAAAGAAAACCTGCCGATTTAAAAATTGGGAAAACAATTGTAAAGGATGCTG GGGTGAATCGAAGTTTGTCTGCATATATGGCGAATCCAGAATCGGAAAGAAAATTATATGCTGATAATATTGATAAAGAG ATGGTGCAACTCAATGTTTTTGTGGAAGGAAAATCAGTTGGATTTGTCAATTGGTATGGAGTCCATCCAACAAATATAAC ATTTGATAATCGATTGATTTCATCAGATAATAAAGGAATTGCTTCGATACTGTCTGAAAAAGAAGCAGAGAAAAATGGAG ACAAGGGTTTTGTTGCAATTTTTGCACAAGCCAATGAAGGTGATGTATCTCCAAATTTAAATTTAAATAATACAGGTCCT GGTAAAGATATTTATGATAGTAGTTTCATTATCGGACAACGTCAATTTTTAGCAAGCCAAGAGATATTAAATGCAAAAGG AAAATCATTAAAAGGTGGATTGAGTTTTTCACATCGATTCATTGATATGAGCCAACACCCAGTGAGAAGTGAATTCTCTG GAACTGGCAAAACAGAATACACATGTCCTTCCGCGTATGGATATGCATTTGCTGCGGGGTCAACGGAAGAAGGTGGTGGG CACTTTTTATTCCATGAAGGAATGACTGAAAAAAATCGAAGATTTTACATTGATTGGATTGCAAAGTTTATGTTACAGTC CCCATCAGAAAAATTGAGAGAATGCCAAAATCCAAAGGCTGTTTTGTTTCCGATGGGTGAAACAAAACCAATTCCAAGTT TGCCACAAATTCTACCGTATGGACTTGTGTTAGTTGGTGAATTATCCATAATGGTTCTGCCACACGAAGTCACGACCATG TCTAGTCGGAGATTAAAAAAAGAAGTTAAGTCGGTTTTGAAAGACAAAATATCTGATATTGTTCTTTCTGGATTGACCAA CGACTTTTCTGGTTACATCACAACTCCAGAAGAATACTCTACTCAGAATTATGAAGGTGGCCATACACTCCATGGACAAC AAAGCCTAAATGCCCTTAGGCAGGAATTTTTTGGAATGGCAAGTGATCTCATCCAAGGTATTGAATTTACAAATGCTTCC AAGTCGGAAATCACTCCATTAGACTTATCGGGAAAGGTGCATCCACTGAAACTTCCTGAATCAGATACAGTCACAACTGA ACCCAAACAAGTGTTAAAGCCAAATGGAAATCTGTATCAAAAAGGAAACCAAGTGGTTTGTAAAGTCAGTGCAGCAAGTC CAAATGTGGGATACCCTAATGTGAATTCCTATTTGTGGGTTGAAAAAAAGAATGGTTCCGGTTGGGAGAAGGTTCGATCA GATTCTGACTTTGATACCAAATTCACTTACCAAAGCCCTGGATTTTTTGACAAAGGTTTAGGAAAGATGGAATTGGTTTG GGAGACGAGTCCATCCATTCCCAATGGCGAATACCGTTTGGTTCACGAAGGGATTTACCTTTCTCCCACTGAGAAAAAAA GTAATTACCGGGTGGAATGCCCTGTCTTCCAAGTCCAATAA
Upstream 100 bases:
>100_bases TTTTTACTTTCACCAACTTCGAGTGATACCTAGTTTTCGTCCGTACTTTCTTTGCCTAGACCTAGTGTCTTAATGCTCTA AAAAAGAACTCATCTGGATT
Downstream 100 bases:
>100_bases AACGATTTAATGAGTTGGTCTGTTCTTTGATTTAGACACAGACCAGCTCCCATGAAACCAAGGGCACTCCCAAGTGGATC CCTTTCTCATCATAAAAACA
Product: putative neutral/alkaline ceramidase
Products: NA
Alternate protein names: N-CDase; NCDase; Acylsphingosine deacylase; N-acylsphingosine amidohydrolase [H]
Number of amino acids: Translated: 706; Mature: 706
Protein sequence:
>706_residues MCLFRLETAGFQHLYGFKIVDNCSGLTVLPVDGKTSRMKLRIFLTLFLLMTLPTFADEPNAFLAGMSKKDITGPPIGVMF WGYAREDQTGVGIQTRQYARALVIEDRLTHKLFAYVTAEVGGIPFEIQREVVAKLQTEVDANFHLGNVLLNASHTHSGPA GHFHYSEVSFYSTQFYKDTYQVLRDGIVEAIKEAYQKRKPADLKIGKTIVKDAGVNRSLSAYMANPESERKLYADNIDKE MVQLNVFVEGKSVGFVNWYGVHPTNITFDNRLISSDNKGIASILSEKEAEKNGDKGFVAIFAQANEGDVSPNLNLNNTGP GKDIYDSSFIIGQRQFLASQEILNAKGKSLKGGLSFSHRFIDMSQHPVRSEFSGTGKTEYTCPSAYGYAFAAGSTEEGGG HFLFHEGMTEKNRRFYIDWIAKFMLQSPSEKLRECQNPKAVLFPMGETKPIPSLPQILPYGLVLVGELSIMVLPHEVTTM SSRRLKKEVKSVLKDKISDIVLSGLTNDFSGYITTPEEYSTQNYEGGHTLHGQQSLNALRQEFFGMASDLIQGIEFTNAS KSEITPLDLSGKVHPLKLPESDTVTTEPKQVLKPNGNLYQKGNQVVCKVSAASPNVGYPNVNSYLWVEKKNGSGWEKVRS DSDFDTKFTYQSPGFFDKGLGKMELVWETSPSIPNGEYRLVHEGIYLSPTEKKSNYRVECPVFQVQ
Sequences:
>Translated_706_residues MCLFRLETAGFQHLYGFKIVDNCSGLTVLPVDGKTSRMKLRIFLTLFLLMTLPTFADEPNAFLAGMSKKDITGPPIGVMF WGYAREDQTGVGIQTRQYARALVIEDRLTHKLFAYVTAEVGGIPFEIQREVVAKLQTEVDANFHLGNVLLNASHTHSGPA GHFHYSEVSFYSTQFYKDTYQVLRDGIVEAIKEAYQKRKPADLKIGKTIVKDAGVNRSLSAYMANPESERKLYADNIDKE MVQLNVFVEGKSVGFVNWYGVHPTNITFDNRLISSDNKGIASILSEKEAEKNGDKGFVAIFAQANEGDVSPNLNLNNTGP GKDIYDSSFIIGQRQFLASQEILNAKGKSLKGGLSFSHRFIDMSQHPVRSEFSGTGKTEYTCPSAYGYAFAAGSTEEGGG HFLFHEGMTEKNRRFYIDWIAKFMLQSPSEKLRECQNPKAVLFPMGETKPIPSLPQILPYGLVLVGELSIMVLPHEVTTM SSRRLKKEVKSVLKDKISDIVLSGLTNDFSGYITTPEEYSTQNYEGGHTLHGQQSLNALRQEFFGMASDLIQGIEFTNAS KSEITPLDLSGKVHPLKLPESDTVTTEPKQVLKPNGNLYQKGNQVVCKVSAASPNVGYPNVNSYLWVEKKNGSGWEKVRS DSDFDTKFTYQSPGFFDKGLGKMELVWETSPSIPNGEYRLVHEGIYLSPTEKKSNYRVECPVFQVQ >Mature_706_residues MCLFRLETAGFQHLYGFKIVDNCSGLTVLPVDGKTSRMKLRIFLTLFLLMTLPTFADEPNAFLAGMSKKDITGPPIGVMF WGYAREDQTGVGIQTRQYARALVIEDRLTHKLFAYVTAEVGGIPFEIQREVVAKLQTEVDANFHLGNVLLNASHTHSGPA GHFHYSEVSFYSTQFYKDTYQVLRDGIVEAIKEAYQKRKPADLKIGKTIVKDAGVNRSLSAYMANPESERKLYADNIDKE MVQLNVFVEGKSVGFVNWYGVHPTNITFDNRLISSDNKGIASILSEKEAEKNGDKGFVAIFAQANEGDVSPNLNLNNTGP GKDIYDSSFIIGQRQFLASQEILNAKGKSLKGGLSFSHRFIDMSQHPVRSEFSGTGKTEYTCPSAYGYAFAAGSTEEGGG HFLFHEGMTEKNRRFYIDWIAKFMLQSPSEKLRECQNPKAVLFPMGETKPIPSLPQILPYGLVLVGELSIMVLPHEVTTM SSRRLKKEVKSVLKDKISDIVLSGLTNDFSGYITTPEEYSTQNYEGGHTLHGQQSLNALRQEFFGMASDLIQGIEFTNAS KSEITPLDLSGKVHPLKLPESDTVTTEPKQVLKPNGNLYQKGNQVVCKVSAASPNVGYPNVNSYLWVEKKNGSGWEKVRS DSDFDTKFTYQSPGFFDKGLGKMELVWETSPSIPNGEYRLVHEGIYLSPTEKKSNYRVECPVFQVQ
Specific function: Hydrolyzes the ceramides into sphingosine and free fatty acid at an optimal pH of 8-9 [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the neutral ceramidase family [H]
Homologues:
Organism=Homo sapiens, GI221218981, Length=662, Percent_Identity=32.9305135951662, Blast_Score=317, Evalue=3e-86, Organism=Homo sapiens, GI221307475, Length=662, Percent_Identity=32.1752265861027, Blast_Score=290, Evalue=2e-78, Organism=Drosophila melanogaster, GI24651405, Length=693, Percent_Identity=30.4473304473304, Blast_Score=311, Evalue=1e-84, Organism=Drosophila melanogaster, GI24651403, Length=693, Percent_Identity=30.4473304473304, Blast_Score=311, Evalue=1e-84, Organism=Drosophila melanogaster, GI24651401, Length=693, Percent_Identity=30.4473304473304, Blast_Score=311, Evalue=1e-84, Organism=Drosophila melanogaster, GI24651397, Length=693, Percent_Identity=30.4473304473304, Blast_Score=311, Evalue=1e-84, Organism=Drosophila melanogaster, GI24651399, Length=693, Percent_Identity=30.4473304473304, Blast_Score=311, Evalue=1e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006823 [H]
Pfam domain/function: NA
EC number: =3.5.1.23 [H]
Molecular weight: Translated: 78658; Mature: 78658
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCLFRLETAGFQHLYGFKIVDNCSGLTVLPVDGKTSRMKLRIFLTLFLLMTLPTFADEPN CEEEEECCCCCCHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC AFLAGMSKKDITGPPIGVMFWGYAREDQTGVGIQTRQYARALVIEDRLTHKLFAYVTAEV HHEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC GGIPFEIQREVVAKLQTEVDANFHLGNVLLNASHTHSGPAGHFHYSEVSFYSTQFYKDTY CCCCHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCCCEEECEEEEHHHHHHHHHH QVLRDGIVEAIKEAYQKRKPADLKIGKTIVKDAGVNRSLSAYMANPESERKLYADNIDKE HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHCCCHHCCCCCE MVQLNVFVEGKSVGFVNWYGVHPTNITFDNRLISSDNKGIASILSEKEAEKNGDKGFVAI EEEEEEEEECCEEEEEEEECCCCCCEEECCEEECCCCCHHHHHHHHHHHHCCCCCEEEEE FAQANEGDVSPNLNLNNTGPGKDIYDSSFIIGQRQFLASQEILNAKGKSLKGGLSFSHRF EEECCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEE IDMSQHPVRSEFSGTGKTEYTCPSAYGYAFAAGSTEEGGGHFLFHEGMTEKNRRFYIDWI ECCCCCCCCHHCCCCCCCCEECCCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEHHHH AKFMLQSPSEKLRECQNPKAVLFPMGETKPIPSLPQILPYGLVLVGELSIMVLPHEVTTM HHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHEEEEECEEEEEECCHHHHH SSRRLKKEVKSVLKDKISDIVLSGLTNDFSGYITTPEEYSTQNYEGGHTLHGQQSLNALR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHCCCCCCCCCEECCHHHHHHHH QEFFGMASDLIQGIEFTNASKSEITPLDLSGKVHPLKLPESDTVTTEPKQVLKPNGNLYQ HHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCEEE KGNQVVCKVSAASPNVGYPNVNSYLWVEKKNGSGWEKVRSDSDFDTKFTYQSPGFFDKGL CCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCHHCCC GKMELVWETSPSIPNGEYRLVHEGIYLSPTEKKSNYRVECPVFQVQ CCEEEEEECCCCCCCCCEEEEECCEEECCCCCCCCEEEECCEEEEC >Mature Secondary Structure MCLFRLETAGFQHLYGFKIVDNCSGLTVLPVDGKTSRMKLRIFLTLFLLMTLPTFADEPN CEEEEECCCCCCHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC AFLAGMSKKDITGPPIGVMFWGYAREDQTGVGIQTRQYARALVIEDRLTHKLFAYVTAEV HHEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC GGIPFEIQREVVAKLQTEVDANFHLGNVLLNASHTHSGPAGHFHYSEVSFYSTQFYKDTY CCCCHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCCCEEECEEEEHHHHHHHHHH QVLRDGIVEAIKEAYQKRKPADLKIGKTIVKDAGVNRSLSAYMANPESERKLYADNIDKE HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHCCCHHCCCCCE MVQLNVFVEGKSVGFVNWYGVHPTNITFDNRLISSDNKGIASILSEKEAEKNGDKGFVAI EEEEEEEEECCEEEEEEEECCCCCCEEECCEEECCCCCHHHHHHHHHHHHCCCCCEEEEE FAQANEGDVSPNLNLNNTGPGKDIYDSSFIIGQRQFLASQEILNAKGKSLKGGLSFSHRF EEECCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEE IDMSQHPVRSEFSGTGKTEYTCPSAYGYAFAAGSTEEGGGHFLFHEGMTEKNRRFYIDWI ECCCCCCCCHHCCCCCCCCEECCCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEHHHH AKFMLQSPSEKLRECQNPKAVLFPMGETKPIPSLPQILPYGLVLVGELSIMVLPHEVTTM HHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHEEEEECEEEEEECCHHHHH SSRRLKKEVKSVLKDKISDIVLSGLTNDFSGYITTPEEYSTQNYEGGHTLHGQQSLNALR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHCCCCCCCCCEECCHHHHHHHH QEFFGMASDLIQGIEFTNASKSEITPLDLSGKVHPLKLPESDTVTTEPKQVLKPNGNLYQ HHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCEEE KGNQVVCKVSAASPNVGYPNVNSYLWVEKKNGSGWEKVRSDSDFDTKFTYQSPGFFDKGL CCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCHHCCC GKMELVWETSPSIPNGEYRLVHEGIYLSPTEKKSNYRVECPVFQVQ CCEEEEEECCCCCCCCCEEEEECCEEECCCCCCCCEEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10593963; 10984043 [H]