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The map label for this gene is fliR [H]

Identifier: 183221909

GI number: 183221909

Start: 2638724

End: 2639506

Strand: Reverse

Name: fliR [H]

Synonym: LEPBI_I2548

Alternate gene names: 183221909

Gene position: 2639506-2638724 (Counterclockwise)

Preceding gene: 183221910

Following gene: 183221908

Centisome position: 73.33

GC content: 41.51

Gene sequence:

>783_bases
ATGGAAGCATTCATTTTACACTTTCAATCCTTTCTTTTTGTTTTAGTTCGAATCCTCGGACTCTTCCTCGTTGCGCCTTT
TTTCTCTTCTGAATCCATCAACTTCTCGTTACGAATGATCTTTTCTTTTATGGTTTCTCTCATCGTGTATCCAGTGGTGG
CAAACTATATGCCACCTGTGCCTGGTCATATGATCAATTTTGGGATTATGATTTTGTCTGAGATGCTCATTGGAGTTTTT
ATTGGATTTCTTGTTTCGCTTGTGTTCAGTGCTTTCCAGATGGCAGGTGAATTTTTTAATAACCAAATTGGATTTGGTTA
CACCGAGATCCTAGACCCCGTCACACAAAACTCACTCCCTGCCATTGGAACGATGAAAAACCTAATGGCCACAGCACTTT
TCCTCGTGATTGGTGCGCACAGGTTTCTCATTGAAACACTTGCTTATTCCTTTGAAAAAATTCGCATCATATCGTTTACA
GGAAAGGTCAATAGTGGGCTTTACCGATTGGTAGAAGATGCGATTGGGGCCATGTTTGTGGTTTCATTTAAAATTGCCTT
ACCTGTGATGGGGATTCTTTTTTTGGTATCTCTTGCGGAAGGGCTTATGGGAAAGGCGGCACAACAAATGAATGTGATGT
CCATGTCCTTCCCTTTGAAAGTATTTATCGGAACTCTCACTCTCATTGCTACGTTAACTTTTATCGCCACACAGATGGTG
CAAGGGATCCAAATCTCCATGGACAAGGCAAGTTTACTCGTTCGGGAGTGGCCTAGTTTATGA

Upstream 100 bases:

>100_bases
GTTTCCATTTTTGCCGTGATTGTCTTTTTTTCAGCATGGATGGTGCGAGTGATGACTGACTACACGAGGGAAATTTTTTT
TATGATCGAAAAGATATGAT

Downstream 100 bases:

>100_bases
AAGAGAAAGATCCCCTTTTTTGCACTTTGAAACAAATCCGGGTATCCACCTATGATTTGATATGTGAATTCATATTTTCT
CCCAAAATAAAATCTTTCTT

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MEAFILHFQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVVANYMPPVPGHMINFGIMILSEMLIGVF
IGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNSLPAIGTMKNLMATALFLVIGAHRFLIETLAYSFEKIRIISFT
GKVNSGLYRLVEDAIGAMFVVSFKIALPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIATQMV
QGIQISMDKASLLVREWPSL

Sequences:

>Translated_260_residues
MEAFILHFQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVVANYMPPVPGHMINFGIMILSEMLIGVF
IGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNSLPAIGTMKNLMATALFLVIGAHRFLIETLAYSFEKIRIISFT
GKVNSGLYRLVEDAIGAMFVVSFKIALPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIATQMV
QGIQISMDKASLLVREWPSL
>Mature_260_residues
MEAFILHFQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVVANYMPPVPGHMINFGIMILSEMLIGVF
IGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNSLPAIGTMKNLMATALFLVIGAHRFLIETLAYSFEKIRIISFT
GKVNSGLYRLVEDAIGAMFVVSFKIALPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIATQMV
QGIQISMDKASLLVREWPSL

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=238, Percent_Identity=26.0504201680672, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28811; Mature: 28811

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAFILHFQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVVANYMPPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PGHMINFGIMILSEMLIGVFIGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNSLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
AIGTMKNLMATALFLVIGAHRFLIETLAYSFEKIRIISFTGKVNSGLYRLVEDAIGAMFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHH
VSFKIALPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIATQMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGIQISMDKASLLVREWPSL
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]