| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is thrS [H]
Identifier: 183221772
GI number: 183221772
Start: 2470440
End: 2472356
Strand: Reverse
Name: thrS [H]
Synonym: LEPBI_I2402
Alternate gene names: 183221772
Gene position: 2472356-2470440 (Counterclockwise)
Preceding gene: 183221773
Following gene: 183221771
Centisome position: 68.68
GC content: 42.04
Gene sequence:
>1917_bases ATGGCAGCACTTACAATTACATTACCCGATGGAAGTTCCAAAGAACTCGAATCAGGAAAGTCATTTTCTGATTTTGTCCA AAACCAACTGCCTTTCTTAAAAGAGAAAGCTCTTGCCGTTGTTTTGTCCGATGGACGAACCGTTGATTTATCTTTTGTTC CAACCGAAAACACGACTGTCAAATTTCTCACCTTCGATGACAAAGAGGGAAAGGAAGTATTCCACCATTCATCTGCCCAC TTACTCGGAATGGCCGTCCAAAGGTTATGGCCCGAAGCAAGGCTCACTGTAGGCCCTGTCATTGAAAATGGACCTGGATT TTTCTTTTATGATATCGATTTTGGAGACTTGGTCATCACAGTGGATGACCTTCCCAAAATTGAAGCCGAAATGGCAAAAA TTGTGAAAGAAGACCTAACCGTAAAACGGTGGGAACTTTCCAAAGAAGAAGCGATAGAAAAATTCAAAAAAGAAAACGAA CCTTATAAAGTAGAACTCATCCAAGGTTTTGATGCCGCCTCAGTTTCGTTATACGGACAAGGGGAGTGGTATGACCTTTG CCGTGGACCACATGTGGCGCGAACAGGCCAACTCAAAGCCTTCAAACTCACAGCAATTTCTGGTGCCTATTGGAAAGGCG ATTCCAAAAACAAACAACTCACTCGTATTTATGGAGTATCCTTCCCCACCAAAAAACTGTTAGATGAATATATCTTTCTC ATCGAAGAGGCGAAAAAAAGGGACCATCGAAAACTCGGAAAAGAATTGGATTTGTTTAGTTTCCAAGATGAGGCACCTGG TTTTCCGTTTTGGCATCCAAAAGGTACAGTGTTATGGAACACCCTAGCATCGTATATCCGAGAAGAATGTTTTCGTCGTG GGTATCAGGAAATCAAAACTCCCGCCATTTTAAATTCCAGCCTTTGGAAAAAGTCCGGGCACTGGGATAATTTTAAAGAA AACATGTATTTCACTGACATCGATGAAAGTGAGTTTGCCGTCAAACCCATGAACTGTCCTGGATGTTGTTTGATTTACAA ATACCATATGCACTCTTACAGAGAACTACCCCTTCGGTTTATGGAACTCGGGAATGTGCATCGTCACGAAATGTCTGGGG TTTTGCATGGACTCTTCCGTGTTCGTGCCTTTACCCAAGACGATGCCCACATCTATGCTCCTCTTGATAAAGTAGAATCG GAAGTAGAAGACATCATTGACTTTACATTTGATGTGTACAAAAAGTTTGGATTCACTGAATTCAAAACCTTCATCGCGAC AAGACCTGAAAAGTCACAAGGTAGCGACGAAGATTGGAACCTCGCCACACAAGCCTTACACGATGCTCTTAAGAAAAAAG GAATTGAATACGGGATCAAAGAAGGGGACGGAGCCTTTTATGGTCCTAAAATTGAATTCAATATCAAGGATTCACTCGGA AGGTTATGGCAATGCGGAACGGTTCAAATTGACTTCTCTATGCCGAACCGATTTGAACTCGATTTCACTGCCTCTGACGG AAAAAAACATGCACCAGTCATGATCCATAGAGCCATCTATGGATCTCTCGAAAGGTTCATTGGAATCCTCATCGAACACT TCGAAGGAAAATTTCCTTTGTGGCTGAACCCAACTCAAATTCGTGTCTTAACTGTGGCAGAAACTCATAGTGATTACGCG AAGGAAGTGTATCAGGATTTAGTAATGCAAGGTTTCCGTGTCGAATTGGATGTTCGGAACGAAAAGATTGGAAGCAAAAT TAGGGATTCCATCATGAAACGCAGTAGTTACACTCTCATCCTTGGGGATAAAGAAAAAGAAGCAGGAAGTATTTCGTATC GCCGTATGGGAGAAGAAACGACTGCTACTGTTTCACGTGATGGATTTCTTTCTTTACTCAAAGGTGAACTCAACTAA
Upstream 100 bases:
>100_bases GAAAGTTTTCAGAAACTAACAGAATCTCTCGAAACAGGAAAACTCTGGTAAAACTTTACTTTTCGGGAGAATGTGCGTGC GAAAACCTGGGATTACACTT
Downstream 100 bases:
>100_bases AGAAATTTCTTGACTAACACTGGTAGGGCTTTACGATTCCTTCCAGTGTCCAAGAGCCAAGCATATCCTACGATAAGGGA ACCAGAAACTCTTTATCTGG
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 638; Mature: 637
Protein sequence:
>638_residues MAALTITLPDGSSKELESGKSFSDFVQNQLPFLKEKALAVVLSDGRTVDLSFVPTENTTVKFLTFDDKEGKEVFHHSSAH LLGMAVQRLWPEARLTVGPVIENGPGFFFYDIDFGDLVITVDDLPKIEAEMAKIVKEDLTVKRWELSKEEAIEKFKKENE PYKVELIQGFDAASVSLYGQGEWYDLCRGPHVARTGQLKAFKLTAISGAYWKGDSKNKQLTRIYGVSFPTKKLLDEYIFL IEEAKKRDHRKLGKELDLFSFQDEAPGFPFWHPKGTVLWNTLASYIREECFRRGYQEIKTPAILNSSLWKKSGHWDNFKE NMYFTDIDESEFAVKPMNCPGCCLIYKYHMHSYRELPLRFMELGNVHRHEMSGVLHGLFRVRAFTQDDAHIYAPLDKVES EVEDIIDFTFDVYKKFGFTEFKTFIATRPEKSQGSDEDWNLATQALHDALKKKGIEYGIKEGDGAFYGPKIEFNIKDSLG RLWQCGTVQIDFSMPNRFELDFTASDGKKHAPVMIHRAIYGSLERFIGILIEHFEGKFPLWLNPTQIRVLTVAETHSDYA KEVYQDLVMQGFRVELDVRNEKIGSKIRDSIMKRSSYTLILGDKEKEAGSISYRRMGEETTATVSRDGFLSLLKGELN
Sequences:
>Translated_638_residues MAALTITLPDGSSKELESGKSFSDFVQNQLPFLKEKALAVVLSDGRTVDLSFVPTENTTVKFLTFDDKEGKEVFHHSSAH LLGMAVQRLWPEARLTVGPVIENGPGFFFYDIDFGDLVITVDDLPKIEAEMAKIVKEDLTVKRWELSKEEAIEKFKKENE PYKVELIQGFDAASVSLYGQGEWYDLCRGPHVARTGQLKAFKLTAISGAYWKGDSKNKQLTRIYGVSFPTKKLLDEYIFL IEEAKKRDHRKLGKELDLFSFQDEAPGFPFWHPKGTVLWNTLASYIREECFRRGYQEIKTPAILNSSLWKKSGHWDNFKE NMYFTDIDESEFAVKPMNCPGCCLIYKYHMHSYRELPLRFMELGNVHRHEMSGVLHGLFRVRAFTQDDAHIYAPLDKVES EVEDIIDFTFDVYKKFGFTEFKTFIATRPEKSQGSDEDWNLATQALHDALKKKGIEYGIKEGDGAFYGPKIEFNIKDSLG RLWQCGTVQIDFSMPNRFELDFTASDGKKHAPVMIHRAIYGSLERFIGILIEHFEGKFPLWLNPTQIRVLTVAETHSDYA KEVYQDLVMQGFRVELDVRNEKIGSKIRDSIMKRSSYTLILGDKEKEAGSISYRRMGEETTATVSRDGFLSLLKGELN >Mature_637_residues AALTITLPDGSSKELESGKSFSDFVQNQLPFLKEKALAVVLSDGRTVDLSFVPTENTTVKFLTFDDKEGKEVFHHSSAHL LGMAVQRLWPEARLTVGPVIENGPGFFFYDIDFGDLVITVDDLPKIEAEMAKIVKEDLTVKRWELSKEEAIEKFKKENEP YKVELIQGFDAASVSLYGQGEWYDLCRGPHVARTGQLKAFKLTAISGAYWKGDSKNKQLTRIYGVSFPTKKLLDEYIFLI EEAKKRDHRKLGKELDLFSFQDEAPGFPFWHPKGTVLWNTLASYIREECFRRGYQEIKTPAILNSSLWKKSGHWDNFKEN MYFTDIDESEFAVKPMNCPGCCLIYKYHMHSYRELPLRFMELGNVHRHEMSGVLHGLFRVRAFTQDDAHIYAPLDKVESE VEDIIDFTFDVYKKFGFTEFKTFIATRPEKSQGSDEDWNLATQALHDALKKKGIEYGIKEGDGAFYGPKIEFNIKDSLGR LWQCGTVQIDFSMPNRFELDFTASDGKKHAPVMIHRAIYGSLERFIGILIEHFEGKFPLWLNPTQIRVLTVAETHSDYAK EVYQDLVMQGFRVELDVRNEKIGSKIRDSIMKRSSYTLILGDKEKEAGSISYRRMGEETTATVSRDGFLSLLKGELN
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38202255, Length=621, Percent_Identity=40.4186795491143, Blast_Score=488, Evalue=1e-138, Organism=Homo sapiens, GI38570111, Length=613, Percent_Identity=39.8042414355628, Blast_Score=481, Evalue=1e-135, Organism=Homo sapiens, GI20070344, Length=651, Percent_Identity=36.405529953917, Blast_Score=424, Evalue=1e-118, Organism=Escherichia coli, GI1788013, Length=612, Percent_Identity=44.281045751634, Blast_Score=556, Evalue=1e-159, Organism=Escherichia coli, GI1786392, Length=153, Percent_Identity=25.4901960784314, Blast_Score=66, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71984184, Length=634, Percent_Identity=41.1671924290221, Blast_Score=503, Evalue=1e-142, Organism=Caenorhabditis elegans, GI71984192, Length=634, Percent_Identity=41.1671924290221, Blast_Score=503, Evalue=1e-142, Organism=Saccharomyces cerevisiae, GI6322112, Length=655, Percent_Identity=40.9160305343511, Blast_Score=488, Evalue=1e-138, Organism=Saccharomyces cerevisiae, GI6322654, Length=393, Percent_Identity=37.6590330788804, Blast_Score=275, Evalue=1e-74, Organism=Drosophila melanogaster, GI24583839, Length=633, Percent_Identity=40.7582938388626, Blast_Score=493, Evalue=1e-139, Organism=Drosophila melanogaster, GI24583842, Length=633, Percent_Identity=40.7582938388626, Blast_Score=492, Evalue=1e-139, Organism=Drosophila melanogaster, GI28574141, Length=633, Percent_Identity=40.7582938388626, Blast_Score=492, Evalue=1e-139,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 73146; Mature: 73015
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALTITLPDGSSKELESGKSFSDFVQNQLPFLKEKALAVVLSDGRTVDLSFVPTENTTV CEEEEEECCCCCCHHHHCCCCHHHHHHHCCCHHHCCEEEEEEECCCEEEEEEECCCCCEE KFLTFDDKEGKEVFHHSSAHLLGMAVQRLWPEARLTVGPVIENGPGFFFYDIDFGDLVIT EEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCCCEEECCEEECCCCEEEEEECCCCEEEE VDDLPKIEAEMAKIVKEDLTVKRWELSKEEAIEKFKKENEPYKVELIQGFDAASVSLYGQ ECCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEC GEWYDLCRGPHVARTGQLKAFKLTAISGAYWKGDSKNKQLTRIYGVSFPTKKLLDEYIFL CCHHHHHCCCCCCCCCCEEEEEEEEECCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHH IEEAKKRDHRKLGKELDLFSFQDEAPGFPFWHPKGTVLWNTLASYIREECFRRGYQEIKT HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCC PAILNSSLWKKSGHWDNFKENMYFTDIDESEFAVKPMNCPGCCLIYKYHMHSYRELPLRF CHHHCHHHHHCCCCCCCCCCCCEEEECCCCCCEEECCCCCCEEEEEEHHHHHHHHHHHHH MELGNVHRHEMSGVLHGLFRVRAFTQDDAHIYAPLDKVESEVEDIIDFTFDVYKKFGFTE HHHCCCHHHHHHHHHHHHHHHHEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCHHH FKTFIATRPEKSQGSDEDWNLATQALHDALKKKGIEYGIKEGDGAFYGPKIEFNIKDSLG HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCEEEEEEHHHHH RLWQCGTVQIDFSMPNRFELDFTASDGKKHAPVMIHRAIYGSLERFIGILIEHFEGKFPL HHEECCEEEEEECCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCE WLNPTQIRVLTVAETHSDYAKEVYQDLVMQGFRVELDVRNEKIGSKIRDSIMKRSSYTLI EECCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE LGDKEKEAGSISYRRMGEETTATVSRDGFLSLLKGELN EECCCCCCCCCHHHHCCCHHHEEECCCHHHHHHCCCCC >Mature Secondary Structure AALTITLPDGSSKELESGKSFSDFVQNQLPFLKEKALAVVLSDGRTVDLSFVPTENTTV EEEEEECCCCCCHHHHCCCCHHHHHHHCCCHHHCCEEEEEEECCCEEEEEEECCCCCEE KFLTFDDKEGKEVFHHSSAHLLGMAVQRLWPEARLTVGPVIENGPGFFFYDIDFGDLVIT EEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCCCEEECCEEECCCCEEEEEECCCCEEEE VDDLPKIEAEMAKIVKEDLTVKRWELSKEEAIEKFKKENEPYKVELIQGFDAASVSLYGQ ECCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEC GEWYDLCRGPHVARTGQLKAFKLTAISGAYWKGDSKNKQLTRIYGVSFPTKKLLDEYIFL CCHHHHHCCCCCCCCCCEEEEEEEEECCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHH IEEAKKRDHRKLGKELDLFSFQDEAPGFPFWHPKGTVLWNTLASYIREECFRRGYQEIKT HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCC PAILNSSLWKKSGHWDNFKENMYFTDIDESEFAVKPMNCPGCCLIYKYHMHSYRELPLRF CHHHCHHHHHCCCCCCCCCCCCEEEECCCCCCEEECCCCCCEEEEEEHHHHHHHHHHHHH MELGNVHRHEMSGVLHGLFRVRAFTQDDAHIYAPLDKVESEVEDIIDFTFDVYKKFGFTE HHHCCCHHHHHHHHHHHHHHHHEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCHHH FKTFIATRPEKSQGSDEDWNLATQALHDALKKKGIEYGIKEGDGAFYGPKIEFNIKDSLG HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCEEEEEEHHHHH RLWQCGTVQIDFSMPNRFELDFTASDGKKHAPVMIHRAIYGSLERFIGILIEHFEGKFPL HHEECCEEEEEECCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCE WLNPTQIRVLTVAETHSDYAKEVYQDLVMQGFRVELDVRNEKIGSKIRDSIMKRSSYTLI EECCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE LGDKEKEAGSISYRRMGEETTATVSRDGFLSLLKGELN EECCCCCCCCCHHHHCCCHHHEEECCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA