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The map label for this gene is popC [H]

Identifier: 183221664

GI number: 183221664

Start: 2356729

End: 2357358

Strand: Direct

Name: popC [H]

Synonym: LEPBI_I2289

Alternate gene names: 183221664

Gene position: 2356729-2357358 (Clockwise)

Preceding gene: 183221663

Following gene: 183221665

Centisome position: 65.47

GC content: 38.1

Gene sequence:

>630_bases
ATGAAGTCATTTGGTATTCCCGTTTATGGTTTGTTTTTATTCCTTTCATTCACAATTGGATGTAATAAGGAAGTGGTAAA
TGCAGAAATTTGGTTTGAGGAACACAAAACCGAAAGGGTTCTCAATCTTTCCAATAAAGAAATCGGAAAGTTACCAACTT
CCATCGGAAACTTAAACAAAGTCGAAGAACTCACTCTACAATACGATTCCCTCGAGTCACTTCCACGAGAGATTGGAAAT
TTAAAACAATTAAAAATCTTAAATCTATTTGGAAATCCTTTGAAGTCCTTACCCGAAGAAATTGGAAATTTGGAAAACCT
GGAAGTATTACTCCTTGGTCGCACTGACTTAAAAGAAATTCCACCTTCCCTCGCCCGTTTAAAACAATTAAAAACACTGG
CTCTTGACGAAACCAAAGTGCAACTAACAGAGGCCGACGTAGAGGTGATCGCAAACCTTCCAAAACTTGAAATCCTTGAT
CTCAGTTTGATGCGCGAATACAAAACCCTTCCCAAAAACCTAGCAAAATTATCGTTTCTCAAACAACTCATCTTTCAAAA
AACGCTTTTGGAAAAAGCAGATGTGGTGAGACTCCGAGACGAATTGCCCAAGGTCCGAGTGAAACTATAA

Upstream 100 bases:

>100_bases
TTGTATAAATCGGACAGGGACCAGATGGACTACATCCAGTTTATCATCCGAGAATTAGAATTTGGCTATAACAAATATTT
AAAGTGAAAATTCTGGCTGT

Downstream 100 bases:

>100_bases
GAGTTTCGAAGAATTTTTTTCCGTTTTCTCTTTGGCCTAGAGTACAAACATTGGTCTTACTATGGCCAAACCAGAAACGG
AAAATCCTTATTCTAAAACA

Product: leucine-rich repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKSFGIPVYGLFLFLSFTIGCNKEVVNAEIWFEEHKTERVLNLSNKEIGKLPTSIGNLNKVEELTLQYDSLESLPREIGN
LKQLKILNLFGNPLKSLPEEIGNLENLEVLLLGRTDLKEIPPSLARLKQLKTLALDETKVQLTEADVEVIANLPKLEILD
LSLMREYKTLPKNLAKLSFLKQLIFQKTLLEKADVVRLRDELPKVRVKL

Sequences:

>Translated_209_residues
MKSFGIPVYGLFLFLSFTIGCNKEVVNAEIWFEEHKTERVLNLSNKEIGKLPTSIGNLNKVEELTLQYDSLESLPREIGN
LKQLKILNLFGNPLKSLPEEIGNLENLEVLLLGRTDLKEIPPSLARLKQLKTLALDETKVQLTEADVEVIANLPKLEILD
LSLMREYKTLPKNLAKLSFLKQLIFQKTLLEKADVVRLRDELPKVRVKL
>Mature_209_residues
MKSFGIPVYGLFLFLSFTIGCNKEVVNAEIWFEEHKTERVLNLSNKEIGKLPTSIGNLNKVEELTLQYDSLESLPREIGN
LKQLKILNLFGNPLKSLPEEIGNLENLEVLLLGRTDLKEIPPSLARLKQLKTLALDETKVQLTEADVEVIANLPKLEILD
LSLMREYKTLPKNLAKLSFLKQLIFQKTLLEKADVVRLRDELPKVRVKL

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI41281398, Length=176, Percent_Identity=36.9318181818182, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI95113664, Length=144, Percent_Identity=40.2777777777778, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI153792305, Length=167, Percent_Identity=33.5329341317365, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI299758423, Length=104, Percent_Identity=35.5769230769231, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI53729363, Length=104, Percent_Identity=35.5769230769231, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI53729359, Length=104, Percent_Identity=35.5769230769231, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI53729361, Length=104, Percent_Identity=35.5769230769231, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI30181233, Length=109, Percent_Identity=38.5321100917431, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI40217803, Length=162, Percent_Identity=30.2469135802469, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI61742784, Length=141, Percent_Identity=35.4609929078014, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI122937315, Length=155, Percent_Identity=32.258064516129, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI45827731, Length=152, Percent_Identity=32.2368421052632, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI61742786, Length=141, Percent_Identity=35.4609929078014, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI55770895, Length=99, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI45827729, Length=152, Percent_Identity=32.2368421052632, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI194394161, Length=150, Percent_Identity=32.6666666666667, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI8923909, Length=99, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI16904383, Length=150, Percent_Identity=32.6666666666667, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI157743290, Length=122, Percent_Identity=33.6065573770492, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI21361633, Length=132, Percent_Identity=34.8484848484849, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71998904, Length=159, Percent_Identity=34.5911949685535, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71981160, Length=165, Percent_Identity=36.969696969697, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71998900, Length=159, Percent_Identity=34.5911949685535, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17537883, Length=159, Percent_Identity=34.5911949685535, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71991525, Length=145, Percent_Identity=35.8620689655172, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71991531, Length=145, Percent_Identity=35.8620689655172, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71981152, Length=145, Percent_Identity=38.6206896551724, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17552452, Length=154, Percent_Identity=34.4155844155844, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17510303, Length=129, Percent_Identity=37.2093023255814, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24650336, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI62472958, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007092, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650330, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650334, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650332, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281362651, Length=162, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI281362653, Length=162, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI281362657, Length=162, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281362655, Length=162, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24641036, Length=125, Percent_Identity=30.4, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221379725, Length=151, Percent_Identity=35.7615894039735, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221379722, Length=151, Percent_Identity=35.7615894039735, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 23832; Mature: 23832

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFGIPVYGLFLFLSFTIGCNKEVVNAEIWFEEHKTERVLNLSNKEIGKLPTSIGNLNK
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHH
VEELTLQYDSLESLPREIGNLKQLKILNLFGNPLKSLPEEIGNLENLEVLLLGRTDLKEI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEECCCCHHHC
PPSLARLKQLKTLALDETKVQLTEADVEVIANLPKLEILDLSLMREYKTLPKNLAKLSFL
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KQLIFQKTLLEKADVVRLRDELPKVRVKL
HHHHHHHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MKSFGIPVYGLFLFLSFTIGCNKEVVNAEIWFEEHKTERVLNLSNKEIGKLPTSIGNLNK
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHH
VEELTLQYDSLESLPREIGNLKQLKILNLFGNPLKSLPEEIGNLENLEVLLLGRTDLKEI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEECCCCHHHC
PPSLARLKQLKTLALDETKVQLTEADVEVIANLPKLEILDLSLMREYKTLPKNLAKLSFL
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KQLIFQKTLLEKADVVRLRDELPKVRVKL
HHHHHHHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]