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The map label for this gene is traC [H]

Identifier: 183221617

GI number: 183221617

Start: 2318193

End: 2319149

Strand: Direct

Name: traC [H]

Synonym: LEPBI_I2241

Alternate gene names: 183221617

Gene position: 2318193-2319149 (Clockwise)

Preceding gene: 183221616

Following gene: 183221618

Centisome position: 64.4

GC content: 29.89

Gene sequence:

>957_bases
ATGAATCAAAAAATTAAAATCGAAGAAATAGTTTCAGAATTAACATTTGAATTAATTAATACGTTGAAAACAAAATCTTT
AAAAAAATGGACGCAACCGTGGTTAAAAAATGGATTCCACACAAATGTAAAAACAAAAAATAAATACAATTTTTGGAACT
CTAAAATCTTAAATAAAGCATTGGAGAAAAATAATTACAAGTATCCTATTTGGGGATCTATTAAGCAATGGAATCTATTA
GGACATTCAATCAAGAAAGGTGAAAAATCTAATGCAAAAATAATTGTTCCGATTTCTGAAAAATTAGGAAGAGAAAATGG
AACACCAAATTCAGAAAATAATAAAAGCGAGAAAGAAGAACAAGCAAATGATGAAATTAAATATAAATTTCGAACATCTC
CTTTATTCAATATTGAACAAACAAATGCTGATTTAAATTTATTCACGAATTTAATCGGGCCTATCCCCTTAAATCAATCT
AATAAAATAATAAAATTTATTAAATCAATAAAGCATAACTCAATAATATCGCATGCTATCGAAAATCCGATTTATTCTAT
TGCACTCGATCAAATCCAACTTCCGTCTCAAAGTTTTTTTAAAACCGAAGAAGACTTTTACATAACTTACCTTCACGAAC
TCGGACATTGGACAAATCATTTTACTAGATTAAATAGAAAACCAAATATTAAAGTTAAAGAATTTGAAGCAAAATTAGCC
TTCGAAGAAATAACTGCCGAAATTTGTTCCGCTCTTTTAGGAACAGCTTTTGGATTTGAAAGAGACCTTCAACACCCTGA
ATACATTCTAGATTGGATAAATAAATTGGAAAAATACCCTTTTGCAATTTATCAAGCGGGATCTTGTGCTCAATCCGCGG
CTCAATATCTTTGTATACAAGCAGGTGAACATGCCCCAACAAGTTGGCCAATACGCTCCAATTCTGATGACTGGTAA

Upstream 100 bases:

>100_bases
CCGTGCCAGTCCCTAACGTCCCGTTGGGACTCAGGGTCGGGAAACGTCGTCTCCACTAGTTCGTTATGCGATATTGCAAA
ATTAACTTAACTCTAATCAC

Downstream 100 bases:

>100_bases
AGCTAAAATCGAATAAAAGCAACATCGCATAACAGCGACTTACCGCTACACTTCGGCACAAGGCCTCGCTCGGGCTACGC
CAAATTGTCCTCCTGGCATT

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MNQKIKIEEIVSELTFELINTLKTKSLKKWTQPWLKNGFHTNVKTKNKYNFWNSKILNKALEKNNYKYPIWGSIKQWNLL
GHSIKKGEKSNAKIIVPISEKLGRENGTPNSENNKSEKEEQANDEIKYKFRTSPLFNIEQTNADLNLFTNLIGPIPLNQS
NKIIKFIKSIKHNSIISHAIENPIYSIALDQIQLPSQSFFKTEEDFYITYLHELGHWTNHFTRLNRKPNIKVKEFEAKLA
FEEITAEICSALLGTAFGFERDLQHPEYILDWINKLEKYPFAIYQAGSCAQSAAQYLCIQAGEHAPTSWPIRSNSDDW

Sequences:

>Translated_318_residues
MNQKIKIEEIVSELTFELINTLKTKSLKKWTQPWLKNGFHTNVKTKNKYNFWNSKILNKALEKNNYKYPIWGSIKQWNLL
GHSIKKGEKSNAKIIVPISEKLGRENGTPNSENNKSEKEEQANDEIKYKFRTSPLFNIEQTNADLNLFTNLIGPIPLNQS
NKIIKFIKSIKHNSIISHAIENPIYSIALDQIQLPSQSFFKTEEDFYITYLHELGHWTNHFTRLNRKPNIKVKEFEAKLA
FEEITAEICSALLGTAFGFERDLQHPEYILDWINKLEKYPFAIYQAGSCAQSAAQYLCIQAGEHAPTSWPIRSNSDDW
>Mature_318_residues
MNQKIKIEEIVSELTFELINTLKTKSLKKWTQPWLKNGFHTNVKTKNKYNFWNSKILNKALEKNNYKYPIWGSIKQWNLL
GHSIKKGEKSNAKIIVPISEKLGRENGTPNSENNKSEKEEQANDEIKYKFRTSPLFNIEQTNADLNLFTNLIGPIPLNQS
NKIIKFIKSIKHNSIISHAIENPIYSIALDQIQLPSQSFFKTEEDFYITYLHELGHWTNHFTRLNRKPNIKVKEFEAKLA
FEEITAEICSALLGTAFGFERDLQHPEYILDWINKLEKYPFAIYQAGSCAQSAAQYLCIQAGEHAPTSWPIRSNSDDW

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4227

COG function: function code L; Antirestriction protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 36910; Mature: 36910

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKIKIEEIVSELTFELINTLKTKSLKKWTQPWLKNGFHTNVKTKNKYNFWNSKILNKA
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LEKNNYKYPIWGSIKQWNLLGHSIKKGEKSNAKIIVPISEKLGRENGTPNSENNKSEKEE
HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCCCCCCCCCCCHHHHH
QANDEIKYKFRTSPLFNIEQTNADLNLFTNLIGPIPLNQSNKIIKFIKSIKHNSIISHAI
HCCCCEEEEEECCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ENPIYSIALDQIQLPSQSFFKTEEDFYITYLHELGHWTNHFTRLNRKPNIKVKEFEAKLA
HCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
FEEITAEICSALLGTAFGFERDLQHPEYILDWINKLEKYPFAIYQAGSCAQSAAQYLCIQ
HHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHC
AGEHAPTSWPIRSNSDDW
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNQKIKIEEIVSELTFELINTLKTKSLKKWTQPWLKNGFHTNVKTKNKYNFWNSKILNKA
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LEKNNYKYPIWGSIKQWNLLGHSIKKGEKSNAKIIVPISEKLGRENGTPNSENNKSEKEE
HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCCCCCCCCCCCHHHHH
QANDEIKYKFRTSPLFNIEQTNADLNLFTNLIGPIPLNQSNKIIKFIKSIKHNSIISHAI
HCCCCEEEEEECCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ENPIYSIALDQIQLPSQSFFKTEEDFYITYLHELGHWTNHFTRLNRKPNIKVKEFEAKLA
HCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
FEEITAEICSALLGTAFGFERDLQHPEYILDWINKLEKYPFAIYQAGSCAQSAAQYLCIQ
HHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHC
AGEHAPTSWPIRSNSDDW
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]