Click here to switch to the map view.

The map label for this gene is vapI [H]

Identifier: 183221608

GI number: 183221608

Start: 2312417

End: 2312758

Strand: Direct

Name: vapI [H]

Synonym: LEPBI_I2231

Alternate gene names: 183221608

Gene position: 2312417-2312758 (Clockwise)

Preceding gene: 183221607

Following gene: 183221610

Centisome position: 64.24

GC content: 28.07

Gene sequence:

>342_bases
ATGAAAAAGGAAAATTTTATCAATGTTCATCCAGGAGAGATTCTTACTGAAGAATTCCTAACTCCATTAGAAATTTCGGC
TTATCGTTTAGCTAAAGAAACTGGTATTCCAGAGTCCAATATCTCAGAAATAATTAATGGAAAAAGAAGCATCACTGCAG
CAATTTCTATAAAATTAGGAAAATTTTTTGAACTTAATCCTATGTTTTGGATTGGTCTTCAAAATGATTATGACATTAGA
TTGGAATCTCATAAACTCAAATCAAAAATTAAAGAAATTAAATCTTTTCGAGAATTAAGAAAGAAAAATGAAAAAATTAA
GAAAGTTAAGCATGTCGCTTGA

Upstream 100 bases:

>100_bases
TCCATTTCTATAAATGATCAATGGCGAATTTGCTTTGGATTCAACAAAGGTGATACTTTCGATGTCGAAATTGTAGATTA
TCATTGAATAAGGAGTTAGT

Downstream 100 bases:

>100_bases
TATTAATAATTGAATTACTGCGCATAACTGACGCTTGCCGTTCCGGGAGGGACGAGCCCTCCCTCCAGGCTCCGCCAAAT
TCCCCTCCGTCACGTCTCTT

Product: putative lambda repressor-like DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKKENFINVHPGEILTEEFLTPLEISAYRLAKETGIPESNISEIINGKRSITAAISIKLGKFFELNPMFWIGLQNDYDIR
LESHKLKSKIKEIKSFRELRKKNEKIKKVKHVA

Sequences:

>Translated_113_residues
MKKENFINVHPGEILTEEFLTPLEISAYRLAKETGIPESNISEIINGKRSITAAISIKLGKFFELNPMFWIGLQNDYDIR
LESHKLKSKIKEIKSFRELRKKNEKIKKVKHVA
>Mature_113_residues
MKKENFINVHPGEILTEEFLTPLEISAYRLAKETGIPESNISEIINGKRSITAAISIKLGKFFELNPMFWIGLQNDYDIR
LESHKLKSKIKEIKSFRELRKKNEKIKKVKHVA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 13140; Mature: 13140

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKENFINVHPGEILTEEFLTPLEISAYRLAKETGIPESNISEIINGKRSITAAISIKLG
CCCCCEEEECCCHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEEECC
KFFELNPMFWIGLQNDYDIRLESHKLKSKIKEIKSFRELRKKNEKIKKVKHVA
CEEECCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKENFINVHPGEILTEEFLTPLEISAYRLAKETGIPESNISEIINGKRSITAAISIKLG
CCCCCEEEECCCHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEEECC
KFFELNPMFWIGLQNDYDIRLESHKLKSKIKEIKSFRELRKKNEKIKKVKHVA
CEEECCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]